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Report for Sequence Feature Glyma.16g027800

Feature Type:gene_model
Chromosome:Gm16
Start:2712534
stop:2717006
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g027800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G47240.1AT NRAMP metal ion transporter 2 JGI N/AIEA
GO:0006810GO-bp transport JGI N/AIEA
GO:0030001GO-bp metal ion transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005215GO-mf transporter activity EnsemblGenomesN/AIEA
GO:0005215GO-mf transporter activity JGI N/AIEA
GO:0046873GO-mf metal ion transmembrane transporter activity EnsemblGenomesN/AIEA
KOG1291 KOG Mn2+ and Fe2+ transporters of the NRAMP family JGI N/AIEA
PTHR11706Panther MANGANESE TRANSPORTER JGI N/AIEA
PTHR11706:SF8Panther PROTEIN MALVOLIO JGI N/AIEA
PF01566PFAM Natural resistance-associated macrophage protein JGI N/AIEA

Proteins Associated with Glyma.16g027800
LocusGene SymbolProtein Name
NRAMP4B metal transporter Nramp4b

Expression Patterns of Glyma.16g027800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g027800
ParalogEvidenceComments
Glyma.07g058900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g027800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g03090 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g027800
>Glyma.16g027800.1 sequence-type=CDS polypeptide=Glyma.16g027800.1.p locus=Glyma.16g027800 ID=Glyma.16g027800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCACTCAGTTACAACAACACAACAAAAGAGAATTCAAGGGAGAAGAAGAAGAAGAGGAGGAGGAAGAAGAAAACCATTTGCTACATTCAGAATGCGAAACAATACCATTGTCCTCACCCCACACATCACCCTCAGAGTGGGAACATGGAAACAGAGAAGAAGAAGAAGAAGAAGAAGAGAAGGACACGGTGTATGCAGCCAAGGACAAGGTGCAGATATTCGACCTGGAGTCCGCCAGTGGCGCCAGTGTGGGGTCAACGGCGGTGCCGCCATTCTCGTGGAGGAAGCTGTGGCTGTTCACCGGACCCGGGTTGTTGATGAGCGTGGCATTTTTAGACCCGGGGAACCTTGAAGGGGACCTTCAGGCTGGAGCCATTGCAGGGTACTCTTTGCTTTGGTTGTTGATGTGGTCAACCTTCATGGGGCTGGTGATACAGCTTCTGTCGGCAAGGCTCGGGGTGGCGACCGGGCGGCACCTGGCGGAGCTGTGCCGGGAGGAGTACTCCAATTGGGCCAGGTTGGTGCTGTGGATCTTGGCTGAGCTTGCTCTCATTGCTGCTGATATTCAAGAGGTTATTGGCAGTGCTATTGCTCTCAAGATTCTTAGCCATGGGATTCTCCCCATTTGGGCTGGTGTGATCATCACAGCCATGGATTGTTTCTTCTTTCTATTTCTCGAGAACTATGGAGTGAGGAAATTAGAAGGTGTATTCGCAGTTTTCATTGGAACTATGGGCTTTTCTTTTGCGTGGATGTTCTTCGATACAAATCCCAGTGAAGAAGAACTACTGATGGGCCTTTTGATCCCAAGAGTAAATTCGAAAACGCTTCGTCAGGCTGTGGAAATTGTGGGGTGTGTGATAACCCCACACAATGTATTCCTCCATTCTGCATTAGTACAATCAAGGGACATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTATAAACTACTACTCAATTGAGTCATCAGTTGCACTTTTAGTAACATTGGTGATCAATCTGTTTGTGATAACCGTTTTCGCTAGGGTGTTCTACGGTACAGAACAGGCGAAAGGCATAGGATTGGTAAATGCAGGGCAGTATCTTCAGGAGAGGTATGGAGGAGGGTTGTTTCCAATTCTCTATATATGGGGTATTGGTTTGTTAGCAGCTGGACAAAGTAGTACCATCACAGGCACATATGCAGGGCAGTTTATAACTGAGGGCTTTCTTAATCTCAATATAAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATTTGTGCAATTGTTTTTAATACATCAGAAGGTTCTTTGGATACCATGAATGAATGGCTTAATGTGGTCCAAGCAATACAGATTCCTTTTGCACTTATCCCCCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGGACCTTCAGAATAGGGCCTATAGTAGAGAGAGTGGCTTGGAGTGTGGCTGTGCTGGTAATATTGGTTTATGGATATATGTTATTAGATTTCTTCCTGGATGAAGTGGATGGAGTGTTGTTTGGTTTTCTAGTCTTCCTTGGTGCTGCAGCATGGATTTCATTTATTATATATCTGGTTCAACATAGTGGTGCCATTTCTTCAATCCTAGTGAGGTCCTCTTATTCCAAAGGCTTTTTCTCTCTTGCTGGCAACTAA
Predicted protein sequences of Glyma.16g027800
>Glyma.16g027800.1.p sequence-type=predicted peptide transcript=Glyma.16g027800.1 locus=Glyma.16g027800 ID=Glyma.16g027800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTQLQQHNKREFKGEEEEEEEEEENHLLHSECETIPLSSPHTSPSEWEHGNREEEEEEEEKDTVYAAKDKVQIFDLESASGASVGSTAVPPFSWRKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTFMGLVIQLLSARLGVATGRHLAELCREEYSNWARLVLWILAELALIAADIQEVIGSAIALKILSHGILPIWAGVIITAMDCFFFLFLENYGVRKLEGVFAVFIGTMGFSFAWMFFDTNPSEEELLMGLLIPRVNSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEAINYYSIESSVALLVTLVINLFVITVFARVFYGTEQAKGIGLVNAGQYLQERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLNLNIKKWLRALITRSCAIVPTMICAIVFNTSEGSLDTMNEWLNVVQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVERVAWSVAVLVILVYGYMLLDFFLDEVDGVLFGFLVFLGAAAWISFIIYLVQHSGAISSILVRSSYSKGFFSLAGN*






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