Glyma.16g020400

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Report for Sequence Feature Glyma.16g020400

Feature Type:	gene_model
Chromosome:	Gm16
Start:	1854042
stop:	1858037
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g020400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00850.1	AT	GRF1-interacting factor 3	JGI	N/A	IEA
GO:1903506	GO-bp	regulation of nucleic acid-templated transcription	EnsemblGenomes	N/A	IEA
GO:1903508	GO-bp	positive regulation of nucleic acid-templated transcription	EnsemblGenomes	N/A	IEA
GO:0003713	GO-mf	transcription coactivator activity	EnsemblGenomes	N/A	IEA
KOG3227	KOG	Calcium-responsive transcription coactivator	JGI	N/A	IEA
PTHR23107	Panther	SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN	JGI	N/A	IEA
PF05030	PFAM	SSXT protein (N-terminal region)	JGI	N/A	IEA

Expression Patterns of Glyma.16g020400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g020400 not represented in the dataset	Glyma.16g020400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g020400

Paralog	Evidence	Comments
Glyma.07g051300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g020400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g02310	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.16g020400

Limit To All Plant Sequences

>Glyma.16g020400.2 sequence-type=transcript locus=Glyma.16g020400 ID=Glyma.16g020400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
tttttatttGACACTGCCAAGTACTAAACTAACCTTAATCTATTCCTTTGTTTTTTATGTTGTTTGCTTTGTCTTCAAATTCCAGAAACATCGTGTGCACAGTACCCCAGAAGATCGAACAAGGATCTCCACGAAGACAAACCTCTGTTCTCAACTGTGTTTCTTTACCTCTCACCTACTTTCAGACCATACCCAGATTGACTAGGCTGAGAAGATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGgctgcagcagcagcaatggctcagcagcagcagcaAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGACATTTTTTTATGTGCTTTTCATGAGATACATATGACTGTTGATAGTAGGTTTTTCTTTAAAGGTAGGACTAGTGTGATCTGATGACCTTTAATAGGTCGACCAAAGGACAAAAGGGCTTCTCTTGTTTGATAGATTAGGTAGTTTGTGTTGTTAGAATTTTGGCACAAAGCAAGTTTGCATCAACTGAAACTGCTGGTGCCTCAACATACTGTACTCGTCACTGGAAGGTCTAAGCATGTGTTATTTATGATCACCTAAATAGCTTGCTGGTTTTTAACAATTTTTCATTGCAGTTTGTTGTGGTCATATAAACAAAAAAAAAATGCTTGTTTTTGGTAATTCTGCTGGATTCTAGGCGTCAATTGAAACGTGAAATGCAGTGGATGGATTCTCTGTCTGAATTTAGTTCAGGTCTATTCTTCATTAGGCCCTGAACTTGCAATTCAGGAACAAGTACTTTGAGCTGCCGCTAAAGGATATTTGCC

>Glyma.16g020400.3 sequence-type=transcript locus=Glyma.16g020400 ID=Glyma.16g020400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTTTGGAATTGGAACTACCGAAAGCCGAACCTTAAACACAAACGCCAAATCTAGCAACTATTGAGttttgttttctttggttggtattttttttttttatttGACACTGCCAAGTACTAAACTAACCTTAATCTATTCCTTTGTTTTTTATGTTGTTTGCTTTGTCTTCAAATTCCAGAAACATCGTGTGCACAGTACCCCAGAAGATCGAACAAGGATCTCCACGAAGACAAACCTCTGTTCTCAACTGTGTTTCTTTACCTCTCACCTACTTTCAGACCATACCCAGGCTGAGAAGATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGgctgcagcagcagcaatggctcagcagcagcagcaAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGACATTTTTTTATGTGCTTTTCATGAGATACATATGACTGTTGATAGTAGGTTTTTCTTTAAAGGTAGGACTAGTGTGATCTGATGACCTTTAATAGGTCGACCAAAGGACAAAAGGGCTTCTCTTGTTTGATAGATTAGGTAGTTTGTGTTGTTAGAATTTTGGCACAAAGCAAGTTTGCATCAACTGAAACTGCTGGTGCCTCAACATACTGTACTCGTCACTGGAAGGTCTAAGCATGTGTTATTTATGATCACCTAAATAGCTTGCTGGTTTTTAAC

>Glyma.16g020400.4 sequence-type=transcript locus=Glyma.16g020400 ID=Glyma.16g020400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAACTACCGAAAGCCGAACCTTAAACACAAACGCCAAATCTAGCAACTATTGAGttttgttttctttgAAACATCGTGTGCACAGTACCCCAGAAGATCGAACAAGGATCTCCACGAAGACAAACCTCTGTTCTCAACTGTGTTTCTTTACCTCTCACCTACTTTCAGACCATACCCAGGCTGAGAAGATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGgctgcagcagcagcaatggctcagcagcagcagcaAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGACATTTTTTTATGTGCTTTTCATGAGATACATATGACTGTTGATAGTAGGTTTTTCTTTAAAGGTAGGACTAGTGTGATCTGATGACCTTTAATAGGTCGACCAAAGGACAAAAGGGCTTCTCTTGTTTGATAGATTAGGTAGTTTGTGTTGTTAGAATTTTGGCACAAAGCAAGTTTGCATCAACTGAAACTGCTGGTGCCTCAACATACTGTACTCGTCACTGGAAGGTCTAAGCATGTGTTATTTATGATCACCTAAATAGCTTGCTGGTTTTTAAC

Coding sequences of Glyma.16g020400

Limit To All Plant Sequences

>Glyma.16g020400.1 sequence-type=CDS polypeptide=Glyma.16g020400.1.p locus=Glyma.16g020400 ID=Glyma.16g020400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

>Glyma.16g020400.2 sequence-type=CDS polypeptide=Glyma.16g020400.2.p locus=Glyma.16g020400 ID=Glyma.16g020400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

>Glyma.16g020400.3 sequence-type=CDS polypeptide=Glyma.16g020400.3.p locus=Glyma.16g020400 ID=Glyma.16g020400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

>Glyma.16g020400.4 sequence-type=CDS polypeptide=Glyma.16g020400.4.p locus=Glyma.16g020400 ID=Glyma.16g020400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGCAGACACCGCCTATGATTCCTATGATGCCTTCGTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACACCAGCCATGCCTCCACAGATGGCACCACACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCAGCAGCAGCAATGGCTCAGCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAGCAGCAGCTACACCAGCAAGCCATCCAAGGTCAAATGGGACTGAGACCTGGAGGAATAAATAATGGCATGCATCCAATGCACAATGAGGGCGGCAACAGCGGTGGTCCACCCTCGGCTACCGGTCCGAACGACGCACGTGGTGGAAGCAAGCAAGATGCTTCTGAGGCTGGAACAGCTGGTGGAGATGGCCAAGGCAGCTCTGCAGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

Predicted protein sequences of Glyma.16g020400

Limit To All Plant Sequences

>Glyma.16g020400.1.p sequence-type=predicted peptide transcript=Glyma.16g020400.1 locus=Glyma.16g020400 ID=Glyma.16g020400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGGINNGMHPMHNEGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

>Glyma.16g020400.2.p sequence-type=predicted peptide transcript=Glyma.16g020400.2 locus=Glyma.16g020400 ID=Glyma.16g020400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGGINNGMHPMHNEGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

>Glyma.16g020400.3.p sequence-type=predicted peptide transcript=Glyma.16g020400.3 locus=Glyma.16g020400 ID=Glyma.16g020400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGGINNGMHPMHNEGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

>Glyma.16g020400.4.p sequence-type=predicted peptide transcript=Glyma.16g020400.4 locus=Glyma.16g020400 ID=Glyma.16g020400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGGINNGMHPMHNEGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

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