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Report for Sequence Feature Glyma.16g003100

Feature Type:gene_model
Chromosome:Gm16
Start:169384
stop:172440
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.16g003100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09800.1AT JGI N/AIEA
5.4.99.12EC tRNA pseudouridine38-40 synthase JGI N/AIEA
GO:0001522GO-bp pseudouridine synthesis JGI N/AIEA
GO:0009451GO-bp RNA modification JGI N/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0009982GO-mf pseudouridine synthase activity JGI N/AIEA
K06173KEGG Transfer RNA biogenesis JGI N/AIEA
KOG4393 KOG Predicted pseudouridylate synthase JGI N/AIEA
PTHR11142PantherFam PSEUDOURIDYLATE SYNTHASE JGI N/AIEA
PF01416Pfam tRNA pseudouridine synthase JGI N/AIEA

Gene model name correspondences to Glyma.16g003100 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g00480 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g003100
>Glyma.16g003100.1 sequence-type=CDS polypeptide=Glyma.16g003100.1.p locus=Glyma.16g003100 id=Glyma.16g003100.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGACAGAGAATCTGAAGCATACGGTGGATTTGGAATGCAGTGATAATAACATTAATAGGCCGTCAAAGATATCAATAATCGAGTATCCCATTGACAGTGACATTGACGAAGAAGAAGAAATGATCAAAAACCCTAGGAATGGCATTCAACGCTATTTGGTTGCTATCGAGTATATTGGGACTCGCTTCTCCGGTTCTCAGAAGCAGCTCAATGTCCGCACCGTCGTCGGGGTTCTTGAGGAAGCTTTTTCTAAATTTGTTGGCCAACCAGTCTCTGTGTCTTGTTCAAGTCGAACTGACGCTGGAGTGCATGCCTTGTCAAATGTTTGTCATGTCGATATTCAACGCATCAGCAAAAGGAGGCCTGGTGAAGTGTTAACTCCTCATGAACCTGCTGTCGTTGGAAGAGCTGTAAACCATTTCTTACAGAAGCAAGACAGTGACTTAATGGTTATTGATGTTCGATGTGTTCCATCTGATTTTCATGCAAGATTTAAAGCACAAGAGCGCATATACTTCTATCGGTTGCTGTCTGGGCCAGAGCCTTTGTCGACCTTCGAGAAAGATCGAGCATGGCATGTACCTGAGGAGCTTAGTCTTCCAGCTATGCAAGAAGCATGCAGAGTTCTTGTTGGATTCCATGATTTTAGTTCCTTCAGGGCAGCTGGTTGTCAGGCAAAGTCACCAATTAGAACTCTGGATGAACTCAGTGTCAATGAGGTAATTGAAAGTCCATATTTTCCATCTCTAATGGATAGAGAACAACATAATAAAGTCAGTGGTGATCTTCGTAGCTGCCCCAACAACTCTGAAACTGACATTCCTCCTACTTCTAATCCTAGCATTGATAAAGTAATGGCATCAAGTCAAGATGTAGGATTTGGCAAAAGAAGGCGACATCGTTGCCTGGTGGTAACAGCACGTGCACGTGCTTTTCTTTACCATCAGGTTAGACTACTTGTTGGTGTTCTCAAGGCTGTTGGCACTGGAAACTTAACAATTCCGGACGTTGAAAGAATTTTGAATGCGAGGACTGTTACGGCCGCAAGTCCAATGGCCCCGGCATGTGGTCTCTACCTAGGAGAGGTGAAATATGATCTGCCTACCACATAG

>Glyma.16g003100.2 sequence-type=CDS polypeptide=Glyma.16g003100.2.p locus=Glyma.16g003100 id=Glyma.16g003100.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGACAGAGAATCTGAAGCATACGGTGGATTTGGAATGCAGTGATAATAACATTAATAGGCCGTCAAAGATATCAATAATCGAGTATCCCATTGACAGTGACATTGACGAAGAAGAAGAAATGATCAAAAACCCTAGGAATGGCATTCAACGCTATTTGGTTGCTATCGAGTATATTGGGACTCGCTTCTCCGGTTCTCAGAAGCAGCTCAATGTCCGCACCGTCGTCGGGGTTCTTGAGGAAGCTTTTTCTAAATTTGTTGGCCAACCAGTCTCTGTGTCTTGTTCAAGTCGAACTGACGCTGGAGTGCATGCCTTGTCAAATGTTTGTCATGTCGATATTCAACGCATCAGCAAAAGGAGGCCTGGTGAAGTGTTAACTCCTCATGAACCTGCTGTCGTTGGAAGAGCTGTAAACCATTTCTTACAGAAGCAAGACAGTGACTTAATGGTTATTGATGTTCGATGTGTTCCATCTGATTTTCATGCAAGATTTAAAGCACAAGAGCGCATATACTTCTATCGGTTGCTGTCTGGGCCAGAGCCTTTGTCGACCTTCGAGAAAGATCGAGCATGGCATGTACCTGAGGAGCTTAGTCTTCCAGCTATGCAAGCAAAGTCACCAATTAGAACTCTGGATGAACTCAGTGTCAATGAGGTAATTGAAAGTCCATATTTTCCATCTCTAATGGATAGAGAACAACATAATAAAGTCAGTGGTGATCTTCGTAGCTGCCCCAACAACTCTGAAACTGACATTCCTCCTACTTCTAATCCTAGCATTGATAAAGTAATGGCATCAAGTCAAGATGTAGGATTTGGCAAAAGAAGGCGACATCGTTGCCTGGTGGTAACAGCACGTGCACGTGCTTTTCTTTACCATCAGGTTAGACTACTTGTTGGTGTTCTCAAGGCTGTTGGCACTGGAAACTTAACAATTCCGGACGTTGAAAGAATTTTGAATGCGAGGACTGTTACGGCCGCAAGTCCAATGGCCCCGGCATGTGGTCTCTACCTAGGAGAGGTGAAATATGATCTGCCTACCACATAG
Predicted protein sequences of Glyma.16g003100
>Glyma.16g003100.1.p sequence-type=predicted peptide transcript=Glyma.16g003100.1 locus=Glyma.16g003100 id=Glyma.16g003100.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MTENLKHTVDLECSDNNINRPSKISIIEYPIDSDIDEEEEMIKNPRNGIQRYLVAIEYIGTRFSGSQKQLNVRTVVGVLEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRPGEVLTPHEPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQERIYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASSQDVGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTAASPMAPACGLYLGEVKYDLPTT*

>Glyma.16g003100.2.p sequence-type=predicted peptide transcript=Glyma.16g003100.2 locus=Glyma.16g003100 id=Glyma.16g003100.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MTENLKHTVDLECSDNNINRPSKISIIEYPIDSDIDEEEEMIKNPRNGIQRYLVAIEYIGTRFSGSQKQLNVRTVVGVLEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRPGEVLTPHEPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQERIYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASSQDVGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTAASPMAPACGLYLGEVKYDLPTT*






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