Glyma.16g001900

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Report for Sequence Feature Glyma.16g001900

Feature Type:	gene_model
Chromosome:	Gm16
Start:	103409
stop:	105590
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g001900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09640.1	AT	Translation elongation factor EF1B, gamma chain	JGI	N/A	IEA
GO:0006412	GO-bp	translation	EnsemblGenomes	N/A	IEA
GO:0006414	GO-bp	translational elongation	EnsemblGenomes	N/A	IEA
GO:0006414	GO-bp	translational elongation	JGI	N/A	IEA
GO:0006749	GO-bp	glutathione metabolic process	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005853	GO-cc	eukaryotic translation elongation factor 1 complex	JGI	N/A	IEA
GO:0003746	GO-mf	translation elongation factor activity	EnsemblGenomes	N/A	IEA
GO:0003746	GO-mf	translation elongation factor activity	JGI	N/A	IEA
GO:0004364	GO-mf	glutathione transferase activity	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
KOG1627	KOG	Translation elongation factor EF-1 gamma	JGI	N/A	IEA
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI	N/A	IEA
PTHR11260:SF7	Panther		JGI	N/A	IEA
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI	N/A	IEA
PF00647	PFAM	Elongation factor 1 gamma, conserved domain	JGI	N/A	IEA
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI	N/A	IEA

Proteins Associated with Glyma.16g001900

Locus	Gene Symbol	Protein Name
	EF1BGAMMA3	EF1Bgamma class glutathione S-transferase

Expression Patterns of Glyma.16g001900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g001900

Paralog	Evidence	Comments
Glyma.12g165500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g001900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g00360	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.16g001900

Limit To All Plant Sequences

>Glyma.16g001900.1 sequence-type=CDS polypeptide=Glyma.16g001900.1.p locus=Glyma.16g001900 ID=Glyma.16g001900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTGATCTTGCACGCAACCAAAGCAAACAAGAATGCTTTCAAGACTCTGATTGCGGCAGAGTACAGTGGCGTCCAAGTGGAATTGGCCCCTAATTTCGAGATGGGTGTCTCTAATAGAACTCCTGAATTCCTTAAAATGAATCCCATAGGAAAGGTTCCTGTCTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCCATTGCTCGTTACGTTGCTCGACTCAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATGCCCACATTGACCAGTGGATTGACTTTTCATCCTTGGAGATCGATGCTAATATTATGAAATTATACCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAGTTGAGGAGGGTGCAAATTCTGCATTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCTTCCAATACATACCTGGTTGGCCATTCTGTTACCCTTGCTGATATCATAACGACATGCAACTTGTATTTAGGATTCAGCCAGCTCTTAGTTAAGAGCTTCACCTCCGAGTTCCCTCACGTCGAGAGATACTTTTGGACATTGGTCAACCAGCCTAACTTCCGAAAGATATTAGGTCAGGTTAAGCAAACTGAGTCTGTTCCACCCATTCCATCCGCTGCAAAGAAGCCTTCCCAGCCTAAGGAATCTAAGCCCAAGCCTAAGGATGAACCAAAGAAAGCAGCTAAACCAGAGCCTAAACAAGAAGCAGAACCAGAGGAGGAGGCACCCAAGCCCAAGCCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGACTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGTTGGTGGATTTCTTCAGAGGATGGATCTGGCTCGCAAGTATGCATTTGGAAAGATGCTGGTGATTGGATCACAGGCACCATTTAAGGTGAAGGGGTTGTGGCTTTTCCGCGGACAAGAGATTCCAAAATTTGTGATTGATGAATGCTATGATATGGAGCTCTACGACTGGACCAAGGTTGACATCTCTGATGAAACTCAGAAAGAGCGCGTCAATCAGATGATCGAGGATTTTGAACCATTTGAGGGAGAGTCTCTTTTGGATGCCAAGTGCTTTAAGTGA

Predicted protein sequences of Glyma.16g001900

Limit To All Plant Sequences

>Glyma.16g001900.1.p sequence-type=predicted peptide transcript=Glyma.16g001900.1 locus=Glyma.16g001900 ID=Glyma.16g001900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALILHATKANKNAFKTLIAAEYSGVQVELAPNFEMGVSNRTPEFLKMNPIGKVPVLETPDGPVFESNAIARYVARLKGDNALFSSSAIDNAHIDQWIDFSSLEIDANIMKLYLPRLGFAPYLPPVEEGANSALKRAFEALNTHLASNTYLVGHSVTLADIITTCNLYLGFSQLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTESVPPIPSAAKKPSQPKESKPKPKDEPKKAAKPEPKQEAEPEEEAPKPKPKNPLDLLPPSKMILDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSQAPFKVKGLWLFRGQEIPKFVIDECYDMELYDWTKVDISDETQKERVNQMIEDFEPFEGESLLDAKCFK*

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