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Report for Sequence Feature Glyma.16G180400

Feature Type:gene_model
Chromosome:Gm16
Start:34093033
stop:34094634
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16G180400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23950.1AT Calcium-dependent lipid-binding (CaLB domain) family protein JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PF00168PFAM C2 domain JGI N/AIEA

Proteins Associated with Glyma.16G180400
LocusGene SymbolProtein Name
C2-151 C2 domain containing protein gene 151

Expression Patterns of Glyma.16G180400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.16G180400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g180400 Wm82.a4.v1ISS As supplied by JGI
Glyma16g29950 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16G180400
>Glyma.16g180400.1 sequence-type=CDS polypeptide=Glyma.16g180400.1.p locus=Glyma.16g180400 ID=Glyma.16g180400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTTCTCGGTACGAAGTGGAAGTGAAGCCCTTATCAGCACGCGCGCTCAAGAACGTGAACTGGCGCCACGGCCCCAACCTCCCCTACGTCGTCGTTTGGGCCGACCGAAGCTACTTACTCTCCACGTCCGTGGACGAGAACGGCAACACCGACGCGAATTGGAATGAAACGCTCACAATTCCGTTGCCGGCTAAGCCCCTCGAGGATCAAAATTTGTTCATCCACGTGGTCCACGCCGGCTCGGGGGAGGACACCAAGTCGCTGATCGGCAAGGCTTGGCTCCGGCTGGTGGATATTGTCAACGACTTCGGAATCGGTGAGCGCGTGAGATGCACGCTCTCGCTGAAGCGTCCCTCGGGGAGGCCGCAAGGGAAGGCTGAGGTTAGCGTGACCATCAGGGAGTCGAGCTATGGTGCGCAGGGTGGGTACAACGCACCTCCCAACGGGGCACCACCACAAAAGGCGAATTGTTACGCTACGCCAAGTGGGTATCCTTATAATGCGACGGCGAAGGGATGGGCTACGCTCGCTGCGGTTTTTGGTGGAATATCTGTGGAAGATGCTGAGTATGTTGATGACAAGAATCAAGATGATGCGGAAGAAAAAAGAGTGGAGGATGATCTTGGTGCTGAGGACAAGATTCAAGATAACGTGGAAGCAAGAGTGGAGGATGATCTTGGTGACCATGCTGATGATGATGACGACTTCTGGCGATGA
Predicted protein sequences of Glyma.16G180400
>Glyma.16g180400.1.p sequence-type=predicted peptide transcript=Glyma.16g180400.1 locus=Glyma.16g180400 ID=Glyma.16g180400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSRYEVEVKPLSARALKNVNWRHGPNLPYVVVWADRSYLLSTSVDENGNTDANWNETLTIPLPAKPLEDQNLFIHVVHAGSGEDTKSLIGKAWLRLVDIVNDFGIGERVRCTLSLKRPSGRPQGKAEVSVTIRESSYGAQGGYNAPPNGAPPQKANCYATPSGYPYNATAKGWATLAAVFGGISVEDAEYVDDKNQDDAEEKRVEDDLGAEDKIQDNVEARVEDDLGDHADDDDDFWR*






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