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Report for Sequence Feature Glyma.16G119900

Feature Type:gene_model
Chromosome:Gm16
Start:26773781
stop:26777462
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16G119900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G28050.2AT Cytidine/deoxycytidylate deaminase family protein JGI N/AIEA
GO:0002100GO-bp tRNA wobble adenosine to inosine editing EnsemblGenomesN/AIEA
GO:0009451GO-bp RNA modification EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008251GO-mf tRNA-specific adenosine deaminase activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0047974GO-mf guanosine deaminase activity EnsemblGenomesN/AIEA
PTHR11079Panther CYTOSINE DEAMINASE JGI N/AIEA
PTHR11079:SF18Panther JGI N/AIEA
PF00383PFAM Cytidine and deoxycytidylate deaminase zinc-binding region JGI N/AIEA

Expression Patterns of Glyma.16G119900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16G119900 not represented in the dataset
Glyma.16G119900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.16G119900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g119900 Wm82.a4.v1ISS As supplied by JGI
Glyma16g22830 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16G119900
>Glyma.16g119900.2 sequence-type=transcript locus=Glyma.16g119900 ID=Glyma.16g119900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ctcacttttctctctctcactttctctctctGGCAAAAGATGGCGTTGTTTGCACTTTCACATTTGGGGGTAACGGGAAGCGTTCTGAGAGTGTGAACGACGACGCTATGGAGGCCAAAAATCATGGTGGGGTCGCATATGGAGGCTGGAAATCACAGCAGCGTCACATTTGGAGGTCGGAAATAGCGACTGCGACGCTTCATGAAGAGTGATTTTGAGTTCTGAAAGAGAAGGTTGGAGCATGAAGGCAGTGTTGGAGATTGATAAATTTCAGTTCTGAAAGTGAAAACCAAAAGAGAAAGCCAAAGAAGTTGGAACACTGACGTGGATGTTAGCTAGCTCTTTGAAAGAGGCATGAAGATGGAACACTGACTTGTTTGAACACCAAAGAAGTTGTAGATCACCCTCTAATAACCTTCCTACACCATCTCATCACGATGACTCCTCAAATCATGAGCTTTGGAATTGCTAATATTATTCATAAGCAAATAACAAGTGATTGGCACAGCCTTTGCTTTGAACATACTCTTCCACATCCCTGTATGGGCAAGAGTTCTAATAACTGGTTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTAGAACTGCTGATATCAATCCTAGTTTTTGTAATGGCTGGATGCTTCTTTGGGGAAACGAGCTAGTTTTTGATGCATGTAGATACTTTCTCATGGAAAGTGGATTCGCACTGTTTGTGGCATTTCTAATCAATGTTGCAGTGGTTTCTGTGTCCGGAACGGTTTGCTCTGCCGACAATCTTTCTGCAGAAAATGTTGATCATTGCAGCGATCTTACCCTTAACTCTGCTTACTTCCTTCTCAAGGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCAGGAGTTAAGAGGTTGGTTTATGGAGCAAAGGCAGAGGCTGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCTGAAAGCACAATTGGAGATTAAAAGGGCTGATGGCAAAGCGGCAAATTTGCTAAAGAAGTTTAATCAATTTAATACTTAAATTTTATAAAAAGTAATGATTTTTGTCATTCTTCATGATTAAAATCTTCTTTTGATAAGAAAAAAAAATCATTATTTTTCTAAAATTTAGGAATTAAATTGAGGAAGATTAAAGTATGAGAA
Coding sequences of Glyma.16G119900
>Glyma.16g119900.1 sequence-type=CDS polypeptide=Glyma.16g119900.1.p locus=Glyma.16g119900 ID=Glyma.16g119900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTCCTCAAATCATGAGCTTTGGAATTGCTAATATTATTCATAAGCAAATAACAAGTGATTGGCACAGCCTTTGCTTTGAACATACTCTTCCACATCCCTGTATGGGCAAGAGTTCTAATAACTGGTTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTAGAACTGCTGATATCAATCCTAGTTTTTGTAATGGCTGGATGCTTCTTTGGGGAAACGAGCTAGTTTTTGATGCATGTAGATACTTTCTCATGGAAAGTGGATTCGCACTGTTTGTGGCATTTCTAATCAATGTTGCAGTGGTTTCTGTGTCCGGAACGGTTTGCTCTGCCGACAATCTTTCTGCAGAAAATGTTGATCATTGCAGCGATCTTACCCTTAACTCTGCTTACTTCCTTCTCAAGGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCAGGAGTTAAGAGGTTGGTTTATGGAGCAAAGGCAGAGGCTGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCTGAAAGCACAATTGGAGATTAAAAGGGCTGATGGCAAAGCGGCAAATTTGCTAAAGAAGTTTAATCAATTTAATACTTAA

>Glyma.16g119900.2 sequence-type=CDS polypeptide=Glyma.16g119900.2.p locus=Glyma.16g119900 ID=Glyma.16g119900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTCCTCAAATCATGAGCTTTGGAATTGCTAATATTATTCATAAGCAAATAACAAGTGATTGGCACAGCCTTTGCTTTGAACATACTCTTCCACATCCCTGTATGGGCAAGAGTTCTAATAACTGGTTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTAGAACTGCTGATATCAATCCTAGTTTTTGTAATGGCTGGATGCTTCTTTGGGGAAACGAGCTAGTTTTTGATGCATGTAGATACTTTCTCATGGAAAGTGGATTCGCACTGTTTGTGGCATTTCTAATCAATGTTGCAGTGGTTTCTGTGTCCGGAACGGTTTGCTCTGCCGACAATCTTTCTGCAGAAAATGTTGATCATTGCAGCGATCTTACCCTTAACTCTGCTTACTTCCTTCTCAAGGCTTGTGAAAAGTTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGCCCTATGTGCTTTGGAGCAATTCACCTCTCAGGAGTTAAGAGGTTGGTTTATGGAGCAAAGGCAGAGGCTGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCTGAAAGCACAATTGGAGATTAAAAGGGCTGATGGCAAAGCGGCAAATTTGCTAAAGAAGTTTAATCAATTTAATACTTAA
Predicted protein sequences of Glyma.16G119900
>Glyma.16g119900.1.p sequence-type=predicted peptide transcript=Glyma.16g119900.1 locus=Glyma.16g119900 ID=Glyma.16g119900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTPQIMSFGIANIIHKQITSDWHSLCFEHTLPHPCMGKSSNNWLQHPLISWSAEIWGKEVRTADINPSFCNGWMLLWGNELVFDACRYFLMESGFALFVAFLINVAVVSVSGTVCSADNLSAENVDHCSDLTLNSAYFLLKACEKLNQIELSDCEIYASCEPCPMCFGAIHLSGVKRLVYGAKAEAAIAIGFDDFISDALRGTGFYLKAQLEIKRADGKAANLLKKFNQFNT*

>Glyma.16g119900.2.p sequence-type=predicted peptide transcript=Glyma.16g119900.2 locus=Glyma.16g119900 ID=Glyma.16g119900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTPQIMSFGIANIIHKQITSDWHSLCFEHTLPHPCMGKSSNNWLQHPLISWSAEIWGKEVRTADINPSFCNGWMLLWGNELVFDACRYFLMESGFALFVAFLINVAVVSVSGTVCSADNLSAENVDHCSDLTLNSAYFLLKACEKLNQIELSDCEIYASCEPCPMCFGAIHLSGVKRLVYGAKAEAAIAIGFDDFISDALRGTGFYLKAQLEIKRADGKAANLLKKFNQFNT*






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