Glyma.16G071900

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Report for Sequence Feature Glyma.16G071900

Feature Type:	gene_model
Chromosome:	Gm16
Start:	7229520
stop:	7238307
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16G071900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14530.1	AT	Transducin/WD40 repeat-like superfamily protein	JGI	N/A	IEA
GO:0080182	GO-bp	histone H3-K4 trimethylation	EnsemblGenomes	N/A	IEA
GO:0048188	GO-cc	Set1C/COMPASS complex	EnsemblGenomes	N/A	IEA
GO:0003682	GO-mf	chromatin binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0042800	GO-mf	histone methyltransferase activity (H3-K4 specific)	EnsemblGenomes	N/A	IEA
KOG1446	KOG	Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2	JGI	N/A	IEA
PTHR19861	Panther	WD40 REPEAT PROTEIN SWD2	JGI	N/A	IEA
PF00400	PFAM	WD domain, G-beta repeat	JGI	N/A	IEA

Expression Patterns of Glyma.16G071900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16G071900 not represented in the dataset	Glyma.16G071900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.16G071900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g071900	Wm82.a4.v1	ISS	As supplied by JGI
Glyma16g07810	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.16G071900

Limit To All Plant Sequences

>Glyma.16g071900.2 sequence-type=transcript locus=Glyma.16g071900 ID=Glyma.16g071900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGAGTACCTTACAAATTCCAAGTATCAAATATTTATCTTAAAAATAAATAATTGTGAGTTAACCGAATATCCCAACCTATCCCACTACTTAAGTGAAAACAACAGTGAAAAAGCATCGGCGGATTTTTCTGCTCTCTTACTTTCTTTCCACTCTGCTGCTACTTTGCTCCGCCAGCATGACGACGGCGTCGTTTACGGAGCTTGACGACGATTTGGTTCGAAGCATGTCCATAGGAGCCGTCTTCTCCGACTTCGGTGGGATGATACATTCGATTGATTTCCATCGAAAGGATGATTTACTTGTCACGTCTAGTGGGGATGACTCGGTGCGACTTTACGACATTGCTAATGCTAAGTTATTGAAGACCACTTCTAATAAGAAACATGGTACTGATCGTATATGTTTTACTCATCATCCAAGCTCTGTTATATGCTCTTCAAAGTACAATTTGGAGTCTACTGGAGAATCATTGCAGTATTTATCAATGTATGATAATCGCTGCCTACGATACTTCAAAGGGCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTTAGGATATGGGATCTTCGGGTAAATGCTTGCCAGGGCATCTTACGTCTACGTGGTAGACCTGCTATTGCCTATGACCAACAAGGCCTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAATTGTTTGATTCTCGTTCTTATGACAAGGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGAAAATCAATGCTTCTGACTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGACAAGCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCAAGATGGGAAGTACTTGGTGGCAGGATCTGGAAGCGGAACCATGCAAGCTTGGAGTATTGAGATGAAAAATGAGGTGGCATGTTGGACCAGCCATATTGGTGTTCCTTCGTGCTTGAAGTGGGCCCCTCACAAGGCCATGTTCGCTGCAGCTTCAAGTGTTCTCACGTTTTGGATACCCAATAATGATTCAAAGCTAAATAATGGTGGCACAGATGCTGAAGCTGGACCTTAACCCCAACATTGAATTAAATATGCTCTTCCTGTCCCAGCCCAGCCACAACTTTGTTTTTGTTGTTGTATCAAGAATTTAACTAACGCACTTCAGAAAAAAAAAATTGACTAACTTGGGAATTTGGTAAGCTACATAGTTTTGATACATTTCTTGAAAATTTTGATGATGCTCCAGGATGTTTGTCAATTCAATTCAATTGTAAATCCCATCACCGAATGCAATTTATGTTGAAGTTTTAGCTACATTGAGAATGTTCTTTATTGGTTA

>Glyma.16g071900.3 sequence-type=transcript locus=Glyma.16g071900 ID=Glyma.16g071900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAACCTATCCCACTACTTAAGTGAAAACAACAGTGAAAAAGCATCGGCGGATTTTTCTGCTCTCTTACTTTCTTTCCACTCTGCTGCTACTTTGCTCCGCCAGCATGACGACGGCGTCGTTTACGGAGCTTGACGACGATTTGGTTCGAAGCATGTCCATAGGAGCCGTCTTCTCCGACTTCGGTGGGATGATACATTCGATTGATTTCCATCGAAAGGATGATTTACTTGTCACGTCTAGTGGGGATGACTCGGTGCGACTTTACGACATTGCTAATGCTAAGTTATTGAAGACCACTTCTAATAAGAAACATGGTACTGATCGTATATGTTTTACTCATCATCCAAGCTCTGTTATATGCTCTTCAAAGTACAATTTGGAGTCTACTGGAGAATCATTGCAGTATTTATCAATGTATGATAATCGCTGCCTACGATACTTCAAAGGGCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTTAGGATATGGGATCTTCGGGTAAATGCTTGCCAGGGCATCTTACGTCTACGTGGTAGACCTGCTATTGCCTATGACCAACAAGGCCTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAATTGTTTGATTCTCGTTCTTATGACAAGGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGAAAATCAATGCTTCTGACTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGACAAGCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCAAGATGGGAAGTACTTGGTGGCAGGATCTGGAAGCGGAACCATGCAAGCTTGGAGTATTGAGATGAAAAATGAGTTACCATCGACTGGGGATTCCAATTCCAGCTACCACCATTTGGTAATCAATTTATTGTTGAGCTGTCTTACTTTTATGGATTTAACTCCTAATTTCAAAAGATAAAATATGGACTTATAACTTGATTTAAAGATTAATGAATTAGATTTTAGTAGATTCATATTTAATATAAATGTGCATGTGTTTTATCAGAATCTGAAGCTTTGACTTAATCCTTGGTTTCAACTCCACACATTATCTTTGGATTTTAAAATAGCCAAAATCTCAATATTATTGACTTAATTCCTGTAAAATGTTTGCTATTGACAATGTGTTCATACTGTACTGTCCTTTCTGTTCTGAGTGTACTGTTGCTTGCTTATGTATTATACTTCTGATTTTATGCCCCTAATCCTTATACACTCCCTCTAATCAGTTAACTAATTCATAAGAATTAAGGATAACATTAAATATGTCCAATATTTATATTATTTTTTTCAAAATTACCCTTAACATTAATGAAACGCATAAAAACATTAATGGATATTGTTCTAATTTTTTGTTGATACAATCTTTCACTGCCATGATTTTAATTAAGGGTATTTATGTAAAAAATAGTTAATGCTAAATATATTTTAGAATGTTTCTTATAAAAAGGAACAAAACTTTGGTCTTAAAAGAGGATACGGAGGGAGCATAAATAATGTCATGAGCATAAAGACATGAATGAAACGTTGAAACAGTAGCATGATGTCAGCTGAAAAAGGTTTTATATATTTATTTACTGATATATTTCAGGCTTAAAGAGGGTCTCGTTTTTAGTTTTAATGTTATATAAAAAAAATCGTTTTAATCTCTGCATTTCAACAAAAATATGGTGTCACTCATCAAGGATTAAAAGTACCTAACTTTTAATTTTAAGACCTAAAAATAAATGAAATTTTAATAAAAGATTAAAAGAAAAAGTCATATTTTAACCAATATTTTATATTTTGTCAATGTAATAGCGCAAAATTTTTGCGATGATGAGCCTCTGGTTTTCTTCCCTGCAGGTGGCATGTTGGACCAGCCATATTGGTGTTCCTTCGTGCTTGAAGTGGGCCCCTCACAAGGCCATGTTCGCTGCAGCTTCAAGTGTTCTCACGTTTTGGATACCCAATAATGATTCAAAGCTAAATAATGGTGGCACAGATGCTGAAGCTGGACCTTAACCCCAACATTGAATTAAATATGCTCTTCCTGTCCCAGCCCAGCCACAACTTTGTTTTTGTTGTTGTATCAAGAATTTAACTAACGCACTTCAGAAAAAAAAAATTGACTAACTTGGGAATTTGGTAAGCTACATAGTTTTGATACATTTCTTGAAAATTTTGATGATGCTCCAGGATGTTTGTCAATTCAATTCAATTGTAAATCCCATCACCGAATGCAATTTATGTTGAAGTTTTAGCTACATTGAGAATGTTCTTTATTGGTTAGACAATTATTTT

Coding sequences of Glyma.16G071900

Limit To All Plant Sequences

>Glyma.16g071900.1 sequence-type=CDS polypeptide=Glyma.16g071900.1.p locus=Glyma.16g071900 ID=Glyma.16g071900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGACGGCGTCGTTTACGGAGCTTGACGACGATTTGGTTCGAAGCATGTCCATAGGAGCCGTCTTCTCCGACTTCGGTGGGATGATACATTCGATTGATTTCCATCGAAAGGATGATTTACTTGTCACGTCTAGTGGGGATGACTCGGTGCGACTTTACGACATTGCTAATGCTAAGTTATTGAAGACCACTTCTAATAAGAAACATGGTACTGATCGTATATGTTTTACTCATCATCCAAGCTCTGTTATATGCTCTTCAAAGTACAATTTGGAGTCTACTGGAGAATCATTGCAGTATTTATCAATGTATGATAATCGCTGCCTACGATACTTCAAAGGGCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTTAGGATATGGGATCTTCGGGTAAATGCTTGCCAGGGCATCTTACGTCTACGTGGTAGACCTGCTATTGCCTATGACCAACAAGGCCTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAATTGTTTGATTCTCGTTCTTATGACAAGGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGAAAATCAATGCTTCTGACTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGACAAGCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCAAGATGGGAAGTACTTGGTGGCAGGATCTGGAAGCGGAACCATGCAAGCTTGGAGTATTGAGATGAAAAATGAGTTACCATCGACTGGGGATTCCAATTCCAGCTACCACCATTTGGTGGCATGTTGGACCAGCCATATTGGTGTTCCTTCGTGCTTGAAGTGGGCCCCTCACAAGGCCATGTTCGCTGCAGCTTCAAGTGTTCTCACGTTTTGGATACCCAATAATGATTCAAAGCTAAATAATGGTGGCACAGATGCTGAAGCTGGACCTTAA

>Glyma.16g071900.2 sequence-type=CDS polypeptide=Glyma.16g071900.2.p locus=Glyma.16g071900 ID=Glyma.16g071900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGACGGCGTCGTTTACGGAGCTTGACGACGATTTGGTTCGAAGCATGTCCATAGGAGCCGTCTTCTCCGACTTCGGTGGGATGATACATTCGATTGATTTCCATCGAAAGGATGATTTACTTGTCACGTCTAGTGGGGATGACTCGGTGCGACTTTACGACATTGCTAATGCTAAGTTATTGAAGACCACTTCTAATAAGAAACATGGTACTGATCGTATATGTTTTACTCATCATCCAAGCTCTGTTATATGCTCTTCAAAGTACAATTTGGAGTCTACTGGAGAATCATTGCAGTATTTATCAATGTATGATAATCGCTGCCTACGATACTTCAAAGGGCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTTAGGATATGGGATCTTCGGGTAAATGCTTGCCAGGGCATCTTACGTCTACGTGGTAGACCTGCTATTGCCTATGACCAACAAGGCCTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAATTGTTTGATTCTCGTTCTTATGACAAGGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGAAAATCAATGCTTCTGACTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGACAAGCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCAAGATGGGAAGTACTTGGTGGCAGGATCTGGAAGCGGAACCATGCAAGCTTGGAGTATTGAGATGAAAAATGAGGTGGCATGTTGGACCAGCCATATTGGTGTTCCTTCGTGCTTGAAGTGGGCCCCTCACAAGGCCATGTTCGCTGCAGCTTCAAGTGTTCTCACGTTTTGGATACCCAATAATGATTCAAAGCTAAATAATGGTGGCACAGATGCTGAAGCTGGACCTTAA

>Glyma.16g071900.3 sequence-type=CDS polypeptide=Glyma.16g071900.3.p locus=Glyma.16g071900 ID=Glyma.16g071900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGACGGCGTCGTTTACGGAGCTTGACGACGATTTGGTTCGAAGCATGTCCATAGGAGCCGTCTTCTCCGACTTCGGTGGGATGATACATTCGATTGATTTCCATCGAAAGGATGATTTACTTGTCACGTCTAGTGGGGATGACTCGGTGCGACTTTACGACATTGCTAATGCTAAGTTATTGAAGACCACTTCTAATAAGAAACATGGTACTGATCGTATATGTTTTACTCATCATCCAAGCTCTGTTATATGCTCTTCAAAGTACAATTTGGAGTCTACTGGAGAATCATTGCAGTATTTATCAATGTATGATAATCGCTGCCTACGATACTTCAAAGGGCATAAACAGAGAGTTGTTTCTCTCTGCATGTCTCCAATCAATGATAGCTTCATGTCTGGTTCTCTAGACCACAGTGTTAGGATATGGGATCTTCGGGTAAATGCTTGCCAGGGCATCTTACGTCTACGTGGTAGACCTGCTATTGCCTATGACCAACAAGGCCTGGTCTTTGCTGTAGCAATGGAAGGGGGAGCTATTAAATTGTTTGATTCTCGTTCTTATGACAAGGGTCCCTTTGACACCTTTCTAGTTGGTGGTGACACAGCCGAAGTTTGTGATATCAAATTCAGTAATGACGGAAAATCAATGCTTCTGACTACTACTAATAACAATATTTATGTTCTTGATGCATATGGAGGAGACAAGCGTTGTGGATTTAGTTTGGAACCATCTCCTGGTACCCCAATAGAGGCTACATTTACCCAAGATGGGAAGTACTTGGTGGCAGGATCTGGAAGCGGAACCATGCAAGCTTGGAGTATTGAGATGAAAAATGAGTTACCATCGACTGGGGATTCCAATTCCAGCTACCACCATTTGGTAATCAATTTATTGTTGAGCTGTCTTACTTTTATGGATTTAACTCCTAATTTCAAAAGATAA

Predicted protein sequences of Glyma.16G071900

Limit To All Plant Sequences

>Glyma.16g071900.1.p sequence-type=predicted peptide transcript=Glyma.16g071900.1 locus=Glyma.16g071900 ID=Glyma.16g071900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTASFTELDDDLVRSMSIGAVFSDFGGMIHSIDFHRKDDLLVTSSGDDSVRLYDIANAKLLKTTSNKKHGTDRICFTHHPSSVICSSKYNLESTGESLQYLSMYDNRCLRYFKGHKQRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAIAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGDKRCGFSLEPSPGTPIEATFTQDGKYLVAGSGSGTMQAWSIEMKNELPSTGDSNSSYHHLVACWTSHIGVPSCLKWAPHKAMFAAASSVLTFWIPNNDSKLNNGGTDAEAGP*

>Glyma.16g071900.2.p sequence-type=predicted peptide transcript=Glyma.16g071900.2 locus=Glyma.16g071900 ID=Glyma.16g071900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTASFTELDDDLVRSMSIGAVFSDFGGMIHSIDFHRKDDLLVTSSGDDSVRLYDIANAKLLKTTSNKKHGTDRICFTHHPSSVICSSKYNLESTGESLQYLSMYDNRCLRYFKGHKQRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAIAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGDKRCGFSLEPSPGTPIEATFTQDGKYLVAGSGSGTMQAWSIEMKNEVACWTSHIGVPSCLKWAPHKAMFAAASSVLTFWIPNNDSKLNNGGTDAEAGP*

>Glyma.16g071900.3.p sequence-type=predicted peptide transcript=Glyma.16g071900.3 locus=Glyma.16g071900 ID=Glyma.16g071900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTASFTELDDDLVRSMSIGAVFSDFGGMIHSIDFHRKDDLLVTSSGDDSVRLYDIANAKLLKTTSNKKHGTDRICFTHHPSSVICSSKYNLESTGESLQYLSMYDNRCLRYFKGHKQRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAIAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGDKRCGFSLEPSPGTPIEATFTQDGKYLVAGSGSGTMQAWSIEMKNELPSTGDSNSSYHHLVINLLLSCLTFMDLTPNFKR*

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