Glyma.15g273900

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Report for Sequence Feature Glyma.15g273900

Feature Type:	gene_model
Chromosome:	Gm15
Start:	51148949
stop:	51154103
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g273900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13450.1	AT	delta subunit of Mt ATP synthase	JGI	N/A	IEA
GO:0015986	GO-bp	ATP synthesis coupled proton transport	EnsemblGenomes	N/A	IEA
GO:0015986	GO-bp	ATP synthesis coupled proton transport	JGI	N/A	IEA
GO:0099132	GO-bp	ATP hydrolysis coupled cation transmembrane transport	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0046933	GO-mf	proton-transporting ATP synthase activity, rotational mechanism	EnsemblGenomes	N/A	IEA
GO:0046933	GO-mf	proton-transporting ATP synthase activity, rotational mechanism	JGI	N/A	IEA
KOG1662	KOG	Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5	JGI	N/A	IEA
PTHR11910	Panther	ATP SYNTHASE DELTA CHAIN	JGI	N/A	IEA
PF00213	PFAM	ATP synthase delta (OSCP) subunit	JGI	N/A	IEA

Expression Patterns of Glyma.15g273900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g273900 not represented in the dataset	Glyma.15g273900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g273900

Paralog	Evidence	Comments
Glyma.08g155200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g273900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g42940	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g273900

Limit To All Plant Sequences

>Glyma.15g273900.2 sequence-type=transcript locus=Glyma.15g273900 ID=Glyma.15g273900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
agaaatagaaCGAGCCACGTGTTCAAATTTACTGCTGCGTCACCTGGGGCTTCAATAGCCCTATTCAGATTCAGTTCCTCTTTGCTTCTCTCTCCAAACAAAACAACAGAACCAAACTCGCCAAAACTAGGGTTTTGCATTGATGGCACTGTGCAACCGCGTCAGATCGGGAATCTCTCTCTTCACCAAATCCACGTTCCTCACTTCCCAGCGATCCACTCTCCAACGATCCCTCGTTGCCCCTTTCATTTCCCTCGCCTCCAGAAATTACGCCAACGTGCCGGGGCAAAAGGAAACCAAAGTTAAGGTCCCTCTGGCTTTGTTTGGAGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCATCTGTGAAAGCCAATGCAGTGGAAAAGGTTGAGACTGAGCTTCTGCAATTTGTTGAGGCAGTAAAGAATAGTCCCATATTTTCACAGTTTATAAGGGACTTGTCTGTGGCTAAGGATGTTAGAGTTAAAGTTATCCAGGATATTTGTGGGGAAGCCAAGTTTTCGGATGTTACAAAGAACTTCCTTGTTATTGTTGCTGAGAATGGAAGGCTTAAAAACATAGACACCATTGCAAAGAGGTTTGCACAGTTGTCAATGGCATATAAGGGAGAAGTGCAAGCGACTGTGACCACTGTTGTTGTAAGTAGTGTTAACAAATTCAAGTTGTAGCTTGCTAAATGATTAGTGGGATGTGATATGAAGTTTATCTCATTGAACAACAGTGTGATGTGATTTAGTTACTCCATTACCTAACTATAATTTTTTAACAGCCTCTTCCCCCTGAAGAGGAAAAGGCATTGAAGGAGACTCTTCAGGAAATAATAGGTTCTGGAGCGAAGGTTCATCTTGAACAGAAGATTGATCCAAGCATACTTGGTGGGCTTGTGCTTGAATTTAGCCAGAAGGTCTTTGACATGTCAATTAAGACCAGGGCACAACAGATGGAGAGGATCCTCCGAGAGCCCGTGTCCATTGCCAACATCTAGAAGACTATAATCTCTCCTGACAATCTGTGTTATCATGGTTTAAAGAAAGAAGTATTACATTCTTGTTCATTATAAATTGTGTGGATGTAGATTTTTATGGGATGGAATGCCATCATTTTGCAAATAAAAGCTACCTCTTTCCAACTTCTTGTTATGCTTCATTGCCATTTCAGTGTATCTGAATGTGTTTTGATTTGGCATTTTGAGATTTTAATTAGTGGGTGCATCTGTCGTAATCTGGATACCTAATAATGATGCTTCGTACTACAAAGTAAAGGAAGATGAAGTTGTATGTAGCCGTTGGATGGGTACTATAATTTAATTAATGATGAATATATCTTTACTCTTAATTTATACATTATTTTAGAGGAG

Coding sequences of Glyma.15g273900

Limit To All Plant Sequences

>Glyma.15g273900.1 sequence-type=CDS polypeptide=Glyma.15g273900.1.p locus=Glyma.15g273900 ID=Glyma.15g273900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTGTGCAACCGCGTCAGATCGGGAATCTCTCTCTTCACCAAATCCACGTTCCTCACTTCCCAGCGATCCACTCTCCAACGATCCCTCGTTGCCCCTTTCATTTCCCTCGCCTCCAGAAATTACGCCAACGTGCCGGGGCAAAAGGAAACCAAAGTTAAGGTCCCTCTGGCTTTGTTTGGAGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCATCTGTGAAAGCCAATGCAGTGGAAAAGGTTGAGACTGAGCTTCTGCAATTTGTTGAGGCAGTAAAGAATAGTCCCATATTTTCACAGTTTATAAGGGACTTGTCTGTGGCTAAGGATGTTAGAGTTAAAGTTATCCAGGATATTTGTGGGGAAGCCAAGTTTTCGGATGTTACAAAGAACTTCCTTGTTATTGTTGCTGAGAATGGAAGGCTTAAAAACATAGACACCATTGCAAAGAGGTTTGCACAGTTGTCAATGGCATATAAGGGAGAAGTGCAAGCGACTGTGACCACTGTTGTTCCTCTTCCCCCTGAAGAGGAAAAGGCATTGAAGGAGACTCTTCAGGAAATAATAGGTTCTGGAGCGAAGGTTCATCTTGAACAGAAGATTGATCCAAGCATACTTGGTGGGCTTGTGCTTGAATTTAGCCAGAAGGTCTTTGACATGTCAATTAAGACCAGGGCACAACAGATGGAGAGGATCCTCCGAGAGCCCGTGTCCATTGCCAACATCTAG

>Glyma.15g273900.2 sequence-type=CDS polypeptide=Glyma.15g273900.2.p locus=Glyma.15g273900 ID=Glyma.15g273900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTGTGCAACCGCGTCAGATCGGGAATCTCTCTCTTCACCAAATCCACGTTCCTCACTTCCCAGCGATCCACTCTCCAACGATCCCTCGTTGCCCCTTTCATTTCCCTCGCCTCCAGAAATTACGCCAACGTGCCGGGGCAAAAGGAAACCAAAGTTAAGGTCCCTCTGGCTTTGTTTGGAGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCATCTGTGAAAGCCAATGCAGTGGAAAAGGTTGAGACTGAGCTTCTGCAATTTGTTGAGGCAGTAAAGAATAGTCCCATATTTTCACAGTTTATAAGGGACTTGTCTGTGGCTAAGGATGTTAGAGTTAAAGTTATCCAGGATATTTGTGGGGAAGCCAAGTTTTCGGATGTTACAAAGAACTTCCTTGTTATTGTTGCTGAGAATGGAAGGCTTAAAAACATAGACACCATTGCAAAGAGGTTTGCACAGTTGTCAATGGCATATAAGGGAGAAGTGCAAGCGACTGTGACCACTGTTGTTGTAAGTAGTGTTAACAAATTCAAGTTGTAG

Predicted protein sequences of Glyma.15g273900

Limit To All Plant Sequences

>Glyma.15g273900.1.p sequence-type=predicted peptide transcript=Glyma.15g273900.1 locus=Glyma.15g273900 ID=Glyma.15g273900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALCNRVRSGISLFTKSTFLTSQRSTLQRSLVAPFISLASRNYANVPGQKETKVKVPLALFGGSGNYASALYIASVKANAVEKVETELLQFVEAVKNSPIFSQFIRDLSVAKDVRVKVIQDICGEAKFSDVTKNFLVIVAENGRLKNIDTIAKRFAQLSMAYKGEVQATVTTVVPLPPEEEKALKETLQEIIGSGAKVHLEQKIDPSILGGLVLEFSQKVFDMSIKTRAQQMERILREPVSIANI*

>Glyma.15g273900.2.p sequence-type=predicted peptide transcript=Glyma.15g273900.2 locus=Glyma.15g273900 ID=Glyma.15g273900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALCNRVRSGISLFTKSTFLTSQRSTLQRSLVAPFISLASRNYANVPGQKETKVKVPLALFGGSGNYASALYIASVKANAVEKVETELLQFVEAVKNSPIFSQFIRDLSVAKDVRVKVIQDICGEAKFSDVTKNFLVIVAENGRLKNIDTIAKRFAQLSMAYKGEVQATVTTVVVSSVNKFKL*

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