Glyma.15g272400

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Report for Sequence Feature Glyma.15g272400

Feature Type:	gene_model
Chromosome:	Gm15
Start:	50978413
stop:	50986557
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g272400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08505.1	AT	zinc finger (CCCH-type/C3HC4-type RING finger) family protein	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
KOG1039	KOG	Predicted E3 ubiquitin ligase	JGI	N/A	IEA
PTHR11224	Panther	MAKORIN-RELATED	JGI	N/A	IEA
PTHR11224:SF10	Panther	LD41384P	JGI	N/A	IEA
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI	N/A	IEA
PF00642	PFAM	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	JGI	N/A	IEA

Expression Patterns of Glyma.15g272400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g272400 not represented in the dataset	Glyma.15g272400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g272400

Paralog	Evidence	Comments
Glyma.08g153800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g272400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g42750	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g272400

Limit To All Plant Sequences

>Glyma.15g272400.2 sequence-type=transcript locus=Glyma.15g272400 ID=Glyma.15g272400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGAAGTTTTGGACACCAAGCTGTAACAAACACAACATTGTGTAGTTTCTCTCCTCCTATGTTTTTTACCACCATCCAAATCCAATTTCCCATCTTTCCTCGTATTTCCATTCCTTTTATATCTCTTTGCCCCCAACACCACCGTTTCTCTCGGGCTCTCTCAACCTTTTCTTAATTTAAGTGGCTGCAAAGCCCCACGTGTTGCCTCCTTCACTCTTTTGGCTGCCCCCACTTTTTTTGTTCACCTCTTTCGTCAACCAATAATTCCTTTGGAGGTTTAGGGTTTTGATCCTTGCAGCTCTCTCTTAATTAAAGGATAtttctttctttctttcttttttttttttttctcttttcAATAACCGCCATGTCTAAGAGGGTTCTTTGCAAGTTTTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTTCAGTAACCGAACCCCAGACCCCAGTTTCAGATACTGTTGCTTTTGGAAATACTAGAGCTACATTTAATGGTGTTGCTACAGCTGCAGAGTTTTCTCTTTCCAGGAGTCCTTACTTTCTTCCTAGTGAACCAGCTTGGAATCAAGAACCGGTTTGGAATCAAGAGTTTGGGTATAATGAACCTTTAGGAGAGGACAATGTTGGTCAAACCATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGATGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCTTGTTCTGTCAAAGCCTACAGCAGCTGAATGTAAGTTTGGGCTGCTGTCTGAATGTGATCATCCGTTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAACAGCACATTGAGGGCCTGCCCTATTTGTCGTAAGCTATCATACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATCGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGTGATACCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCATTTAAGATGAATGGTGTTGTTCGTATGTTCCAGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAGTGCATGTGTTAAATGGTAGATGGACATGCTATGAGGGTATAAACTTAAAATAAGTTCAATTTTTAAAGCAGATAAATCCAAGTATGGATTGATGGTGGTATACTCTATTTGAAGCATGGTGGAAAGCACTCTTTTAGCCATCAGTGAGACTTTTAGAAGCATTTCTTTTGTCTGGTGGATTTCAATGTTAATATGCAAATATTGATATTGGGGTGATGAAGTTTTCCTGTTCACATTATTGAGATCTTAAGATATACCTTTTTATTGTATACTGGGATTCCCTTGCTGTGGGTGGCACTGCACCAAGAGTCTTGGGAAAGGGTTCAACATATGTATCGGTTTTGTTATCTCTTATAGGACTTTGTCATGGCCCTTTAGGGGCTTATATTGGTGACCCGTTTCCTTTTGATGAATATACGAGTATAATCGAAGTTTCACCCATTGAATATACGACTCCTAGTGAAATTTCATTCAATTTAAGAAGCCA

>Glyma.15g272400.3 sequence-type=transcript locus=Glyma.15g272400 ID=Glyma.15g272400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGAAGTTTTGGACACCAAGCTGTAACAAACACAACATTGTGTAGTTTCTCTCCTCCTATGTTTTTTACCACCATCCAAATCCAATTTCCCATCTTTCCTCGTATTTCCATTCCTTTTATATCTCTTTGCCCCCAACACCACCGTTTCTCTCGGGCTCTCTCAACCTTTTCTTAATTTAAGTGGCTGCAAAGCCCCACGTGTTGCCTCCTTCACTCTTTTGGCTGCCCCCACTTTTTTTGTTCACCTCTTTCGTCAACCAATAATTCCTTTGGAGGTTTAGGGTTTTGATCCTTGCAGCTCTCTCTTAATTAAAGGATAtttctttctttctttcttttttttttttttctcttttcAATAACCGCCATGTCTAAGAGGGTTCTTTGCAAGTTTTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTTCAGTAACCGAACCCCAGACCCCAGTTTCAGATACTGTTGCTTTTGGAAATACTAGAGCTACATTTAATGGTGTTGCTACAGCTGCAGAGTTTTCTCTTTCCAGGAGTCCTTACTTTCTTCCTAGTGAACCAGCTTGGAATCAAGAACCGGTTTGGAATCAAGAGTTTGGGTATAATGAACCTTTAGGAGAGGACAATGTTGGTCAAACCATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGATGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCTTGTTCTGTCAAAGCCTACAGCAGCTGAATGTAAGTTTGGGCTGCTGTCTGAATGTGATCATCCGTTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAACAGCACATTGAGGGCCTGCCCTATTTGTCGTAAGCTATCATACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATCGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGTGATACCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCATTTAAGATGAATGGTGTTGTTCGTATGTTCCAGTGCTTTTTCAGTAAACCATATGCACTTGATAACCCCAAGTTTTCTGAAATGGGTACCTGAGAAAGAACCTGCACTGTGCATTCTGTCGTTGTTGTAATAAAGTGCATGTGTTAAATGGTAGATGGACATGCTATGAGGGTATAAACTTAAAATAAGTTCAATTTTTAAAGCAGATAAATCCAAGTATGGATTGATGGTGGTATACTCTATTTGAAGCATGGTGGAAAGCACTCTTTTAGCCATCAGTGAGACTTTTAGAAGCATTTCTTTTGTCTGGTGGATTTCAATGTTAATATGCAAATATTGATATTGGGGTGATGAAGTTTTCCTGTTCACATTATTGAGATCTTAAGATATACCTTTTTATTGTATACTGGGATTCCCTTGCTGTGGGTGGCACTGCACCAAGAGTCTTGGGAAAGGGTTCAACATATGTATCGGTTTTGTTATCTCTTATAGGACTTTGTCATGGCCCTTTAGGGGCTTATATTGGTGACCCGTTTCCTTTTGATGAATATACGAGTATAATCGAAGTTTCACCCATTGAATATACGACTCCTAGTGAAATTTCATTCAATTTAAGAAGCCA

Coding sequences of Glyma.15g272400

Limit To All Plant Sequences

>Glyma.15g272400.1 sequence-type=CDS polypeptide=Glyma.15g272400.1.p locus=Glyma.15g272400 ID=Glyma.15g272400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTAAGAGGGTTCTTTGCAAGTTTTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTTCAGTAACCGAACCCCAGACCCCAGTTTCAGATACTGTTGCTTTTGGAAATACTAGAGCTACATTTAATGGTGTTGCTACAGCTGCAGAGTTTTCTCTTTCCAGGAGTCCTTACTTTCTTCCTAGTGAACCAGCTTGGAATCAAGAACCGGTTTGGAATCAAGAGTTTGGGTATAATGAACCTTTAGGAGAGGACAATGTTGGTCAAACCATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGATGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCTTGTTCTGTCAAAGCCTACAGCAGCTGAATGTAAGTTTGGGCTGCTGTCTGAATGTGATCATCCGTTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAACAGCACATTGAGGGCCTGCCCTATTTGTCGTAAGCTATCATACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATCGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGTGATACCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCATTTAAGATGA

>Glyma.15g272400.2 sequence-type=CDS polypeptide=Glyma.15g272400.2.p locus=Glyma.15g272400 ID=Glyma.15g272400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTAAGAGGGTTCTTTGCAAGTTTTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTTCAGTAACCGAACCCCAGACCCCAGTTTCAGATACTGTTGCTTTTGGAAATACTAGAGCTACATTTAATGGTGTTGCTACAGCTGCAGAGTTTTCTCTTTCCAGGAGTCCTTACTTTCTTCCTAGTGAACCAGCTTGGAATCAAGAACCGGTTTGGAATCAAGAGTTTGGGTATAATGAACCTTTAGGAGAGGACAATGTTGGTCAAACCATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGATGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCTTGTTCTGTCAAAGCCTACAGCAGCTGAATGTAAGTTTGGGCTGCTGTCTGAATGTGATCATCCGTTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAACAGCACATTGAGGGCCTGCCCTATTTGTCGTAAGCTATCATACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATCGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGTGATACCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCATTTAAGATGA

>Glyma.15g272400.3 sequence-type=CDS polypeptide=Glyma.15g272400.3.p locus=Glyma.15g272400 ID=Glyma.15g272400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTAAGAGGGTTCTTTGCAAGTTTTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGAGCAATCTTCTGCTCCATCTTCTTCAGTAACCGAACCCCAGACCCCAGTTTCAGATACTGTTGCTTTTGGAAATACTAGAGCTACATTTAATGGTGTTGCTACAGCTGCAGAGTTTTCTCTTTCCAGGAGTCCTTACTTTCTTCCTAGTGAACCAGCTTGGAATCAAGAACCGGTTTGGAATCAAGAGTTTGGGTATAATGAACCTTTAGGAGAGGACAATGTTGGTCAAACCATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGAAACTGTCCACGAGGGGAAAAATGCCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAGCATTGCTTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGAGTTGTGAAAATAAGCATAAGCATCTTGATGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTGGAGCTTGTTCTGTCAAAGCCTACAGCAGCTGAATGTAAGTTTGGGCTGCTGTCTGAATGTGATCATCCGTTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTGGGGATGGATGTTAACAGCACATTGAGGGCCTGCCCTATTTGTCGTAAGCTATCATACTTTGTCATTCCAAGTGTCATTTGGTACTCAACAACTGAAGAAAAACAAGAAATCATCGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTTGACTTTGGGGAAGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTGGAGCAGGTAGTTTTGCGACATCTAGGGGCTGCAGATGGTGATACCGTAATTGCAAAAGACATCAGGTTGTCGGATTTCCTTTCTAACATGCATTTAAGATGA

Predicted protein sequences of Glyma.15g272400

Limit To All Plant Sequences

>Glyma.15g272400.1.p sequence-type=predicted peptide transcript=Glyma.15g272400.1 locus=Glyma.15g272400 ID=Glyma.15g272400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASREQSSAPSSSVTEPQTPVSDTVAFGNTRATFNGVATAAEFSLSRSPYFLPSEPAWNQEPVWNQEFGYNEPLGEDNVGQTIITSPSELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKSCENKHKHLDALKRSQEIECSVCLELVLSKPTAAECKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGEGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGDTVIAKDIRLSDFLSNMHLR*

>Glyma.15g272400.2.p sequence-type=predicted peptide transcript=Glyma.15g272400.2 locus=Glyma.15g272400 ID=Glyma.15g272400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASREQSSAPSSSVTEPQTPVSDTVAFGNTRATFNGVATAAEFSLSRSPYFLPSEPAWNQEPVWNQEFGYNEPLGEDNVGQTIITSPSELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKSCENKHKHLDALKRSQEIECSVCLELVLSKPTAAECKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGEGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGDTVIAKDIRLSDFLSNMHLR*

>Glyma.15g272400.3.p sequence-type=predicted peptide transcript=Glyma.15g272400.3 locus=Glyma.15g272400 ID=Glyma.15g272400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASREQSSAPSSSVTEPQTPVSDTVAFGNTRATFNGVATAAEFSLSRSPYFLPSEPAWNQEPVWNQEFGYNEPLGEDNVGQTIITSPSELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHMKSCENKHKHLDALKRSQEIECSVCLELVLSKPTAAECKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYKAKLKSIDCKHFDFGEGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGDTVIAKDIRLSDFLSNMHLR*

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