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Report for Sequence Feature Glyma.15g272000

Feature Type:gene_model
Chromosome:Gm15
Start:50926598
stop:50933550
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g272000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52120.1AT SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein JGI N/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
PTHR23340Panther ARGININE/SERINE RICH SPLICING FACTOR SF4/14 JGI N/AIEA
PF01585PFAM G-patch domain JGI N/AIEA
PF01805PFAM Surp module JGI N/AIEA

Expression Patterns of Glyma.15g272000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g272000
ParalogEvidenceComments
Glyma.08g152600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g272000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g42690 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g272000
>Glyma.15g272000.2 sequence-type=transcript locus=Glyma.15g272000 ID=Glyma.15g272000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCTCATATATAAACGAAGCGAGTCAGGGGACAGACACCTATCAATTTCGTAGGTTTGTACATCTTTTGGTTTGGGGCGAAAGTTCAGCCTTTTCAGATTTGCATCAATTTCAACAGAGAACAACGTGATTTGTGGATTGCTGTAAAGTGCATTATTTGGCCATTAGCTAATGGACAAGGGGGTGCCTCCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGATAAAGGGAAGAATGTCAAATTGGAGGATTCTAAACCAATTAAGGGTGGTTCCAGTGGAAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTGAGTGCTGATGAGGATGAAGAAGAAACAGAAGCTGGGTATGTTTCAAACGATGCACCACTAAAACGGCAAAAGTTAGGCCAGGAGGAAGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCATTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAATTGGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTAACACGTCAAAAAAATCCTGGGGATACACCTTTCAAATTTTTGTTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCGGCTTGCTCAAGAAGAAAATGCTCTTGTGCAATCAAGGGAATCACAGGTGCCTCGTAATGGGGGTACAAGCACTTCATCTTCCAAACAGACTAATGGTCATCAGAGATCATCTCAGCAGCATACATACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATTTTCAATTCAAACATCATCAGTAGGAAGCAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAAAAAGCTGCACGGGAAGAGAAGTATAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTTGAAAAGTTCTTGGCTACCTGTAATGATGCTGCAGCGCAGAAAGCTGCTATGGAGGCCGCAGAGAGGGCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTGGATCCAGGAAGGGTATTGCGGATCCTATCATGGCCGGTAATGTTAAGAAGAATAACCTGGGGGTTGGGGCTCAGGAACCTGGAGAGGTGAGTGCTGAGGATGACATATATGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGTTACAGACCCAATCCCCTGAACAATCCTCGCAAGGCTTATTACTGAACTTGACATTGGGTGCTTTGTGCAACTCTTCAGGAAAAGTTAACTTTTACAAAGTGGGATGAACTGGTGTGTTGATAGTAGGGTTTTTATTGTGTGCTGCAGTGCTTGTAGTCTTTTGAAACTAAGATTTGGGGGAGAAAAGAGGGGGAAGGGGTAATGTTCACTTCAATCGCATTTTTATCCGCCAAAGAATAATGGGTTTTTGGTTATTTTTACTTGTCAGAGCTTTTGGAACATGTTTTTTGTATCGCAAGCATATTATGAAGTGGTACAGGGATATTATGGTGTATATGGTTTGTTTAATCCGGGAAACCTAGTCTTGGATATTGATAATAAATGGGGAACTTGGCTTTATTGTTTGACgattatgattatttgacgattatgattaagatGTTTTATCAAATGTAATACAAGATGATAAATAAAAAAA
Coding sequences of Glyma.15g272000
>Glyma.15g272000.1 sequence-type=CDS polypeptide=Glyma.15g272000.1.p locus=Glyma.15g272000 ID=Glyma.15g272000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACAAGGGGGTGCCTCCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGATAAAGGGAAGAATGTCAAATTGGAGGATTCTAAACCAATTAAGGTTATTTCAGGGTCTTTGTCTCCCAATCCTTCCTTTACCAAAACGCCTGTGGACTTGAAGGTTAATGACACAAGGAAAATATCCCAGGGTGGTTCCAGTGGAAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTGAGTGCTGATGAGGATGAAGAAGAAACAGAAGCTGGGTATGTTTCAAACGATGCACCACTAAAACGGCAAAAGTTAGGCCAGGAGGAAGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCATTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAATTGGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTAACACGTCAAAAAAATCCTGGGGATACACCTTTCAAATTTTTGTTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCGGCTTGCTCAAGAAGAAAATGCTCTTGTGCAATCAAGGGAATCACAGGTGCCTCGTAATGGGGGTACAAGCACTTCATCTTCCAAACAGACTAATGGTCATCAGAGATCATCTCAGCAGCATACATACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATTTTCAATTCAAACATCATCAGTAGGAAGCAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAAAAAGCTGCACGGGAAGAGAAGTATAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTTGAAAAGTTCTTGGCTACCTGTAATGATGCTGCAGCGCAGAAAGCTGCTATGGAGGCCGCAGAGAGGGCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTGGATCCAGGAAGGGTATTGCGGATCCTATCATGGCCGGTAATGTTAAGAAGAATAACCTGGGGGTTGGGGCTCAGGAACCTGGAGAGGTGAGTGCTGAGGATGACATATATGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGTTACAGACCCAATCCCCTGAACAATCCTCGCAAGGCTTATTACTGA

>Glyma.15g272000.2 sequence-type=CDS polypeptide=Glyma.15g272000.2.p locus=Glyma.15g272000 ID=Glyma.15g272000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACAAGGGGGTGCCTCCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGATAAAGGGAAGAATGTCAAATTGGAGGATTCTAAACCAATTAAGGGTGGTTCCAGTGGAAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCCCCTGTTAAGTTGAGTGCTGATGAGGATGAAGAAGAAACAGAAGCTGGGTATGTTTCAAACGATGCACCACTAAAACGGCAAAAGTTAGGCCAGGAGGAAGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCATTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAATTGGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTAACACGTCAAAAAAATCCTGGGGATACACCTTTCAAATTTTTGTTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCGGCTTGCTCAAGAAGAAAATGCTCTTGTGCAATCAAGGGAATCACAGGTGCCTCGTAATGGGGGTACAAGCACTTCATCTTCCAAACAGACTAATGGTCATCAGAGATCATCTCAGCAGCATACATACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATTTTCAATTCAAACATCATCAGTAGGAAGCAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAAAAAGCTGCACGGGAAGAGAAGTATAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTTGAAAAGTTCTTGGCTACCTGTAATGATGCTGCAGCGCAGAAAGCTGCTATGGAGGCCGCAGAGAGGGCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTGGATCCAGGAAGGGTATTGCGGATCCTATCATGGCCGGTAATGTTAAGAAGAATAACCTGGGGGTTGGGGCTCAGGAACCTGGAGAGGTGAGTGCTGAGGATGACATATATGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGTTACAGACCCAATCCCCTGAACAATCCTCGCAAGGCTTATTACTGA
Predicted protein sequences of Glyma.15g272000
>Glyma.15g272000.1.p sequence-type=predicted peptide transcript=Glyma.15g272000.1 locus=Glyma.15g272000 ID=Glyma.15g272000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDKGVPPSLFVNDGSFMERFKQLQQEQDKGKNVKLEDSKPIKVISGSLSPNPSFTKTPVDLKVNDTRKISQGGSSGKLAFSLKQKSKLVPPPVKLSADEDEEETEAGYVSNDAPLKRQKLGQEEGIDQSSRQLDVAPHSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYRLAQEENALVQSRESQVPRNGGTSTSSSKQTNGHQRSSQQHTYQIPASALYESADNPRASGFSIQTSSVGSSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKHSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLATCNDAAAQKAAMEAAERAKIQADNVGHRLLSKMGWKEGEGLGGSRKGIADPIMAGNVKKNNLGVGAQEPGEVSAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY*

>Glyma.15g272000.2.p sequence-type=predicted peptide transcript=Glyma.15g272000.2 locus=Glyma.15g272000 ID=Glyma.15g272000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDKGVPPSLFVNDGSFMERFKQLQQEQDKGKNVKLEDSKPIKGGSSGKLAFSLKQKSKLVPPPVKLSADEDEEETEAGYVSNDAPLKRQKLGQEEGIDQSSRQLDVAPHSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYRLAQEENALVQSRESQVPRNGGTSTSSSKQTNGHQRSSQQHTYQIPASALYESADNPRASGFSIQTSSVGSSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKHSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLATCNDAAAQKAAMEAAERAKIQADNVGHRLLSKMGWKEGEGLGGSRKGIADPIMAGNVKKNNLGVGAQEPGEVSAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY*






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