Glyma.15g266700

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Report for Sequence Feature Glyma.15g266700

Feature Type:	gene_model
Chromosome:	Gm15
Start:	50295277
stop:	50301000
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g266700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65930.1	AT	cytosolic NADP+-dependent isocitrate dehydrogenase	JGI	N/A	IEA
GO:0006099	GO-bp	tricarboxylic acid cycle	EnsemblGenomes	N/A	IEA
GO:0006102	GO-bp	isocitrate metabolic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0000287	GO-mf	magnesium ion binding	EnsemblGenomes	N/A	IEA
GO:0004450	GO-mf	isocitrate dehydrogenase (NADP+) activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016616	GO-mf	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	EnsemblGenomes	N/A	IEA
GO:0016616	GO-mf	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0051287	GO-mf	NAD binding	EnsemblGenomes	N/A	IEA
KOG1526	KOG	NADP-dependent isocitrate dehydrogenase	JGI	N/A	IEA
PTHR11822	Panther	NADP-SPECIFIC ISOCITRATE DEHYDROGENASE	JGI	N/A	IEA
PF00180	PFAM	Isocitrate/isopropylmalate dehydrogenase	JGI	N/A	IEA
PWY-6549	SoyCyc9	L-glutamine biosynthesis III	Plant Metabolic Network		ISS
GN7V-50896	SoyCyc9-rxn	isocitrate dehydrogenase (NADP⁺)	Plant Metabolic Network		ISS

Expression Patterns of Glyma.15g266700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g266700 not represented in the dataset	Glyma.15g266700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g266700

Paralog	Evidence	Comments
Glyma.08g160500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g266700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g42100	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g266700

Limit To All Plant Sequences

>Glyma.15g266700.2 sequence-type=transcript locus=Glyma.15g266700 ID=Glyma.15g266700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GATAACTGAACTCAGGCTTCAGTGCCACCAATCTGTTGGTTCAACAGTAGATGAATCGTCCATTCATCTAACTAAGCTTCAAATTGAGTCTCACCTGTAGCCCTTTGACATCCTGATATAGCTATATCCCCAAGATAAATCCATTGGGTATAATGTAGCTATCAAATGTGCTACTATAACTCCAGATGAAGCTCGCATCAAGGAGTTTAACTTAAAGCAAATGTGGAGAAGTCCAAATGGGACGATCCGGAACATTCTAAATGGTACAGTTTTTAGAGAGCCAATTATCTGTAAGAACATTCCTCGTCTTGTTTCAGGATGGACAAAGCCAATATGCATTGGAAGACATGCTTTTGGAGACCAATATCGGGCAACTGATACAGTTATAAAAGGCCCAGGAAAGCTAAAATTGGTTTTTGCACCCAGTGGAAATGAAGGCATTAAAGAGCTAGAGGTCTATAACTTTACTGGTGACGGAGGCATAGCTTTGTCCATGTATAATACTGATGAGTCCATTCGAGCTTTTGCTGAGGCTTCGATGAACTTTGCTTACCAGAAGAAATGGCCTCTCTATCTTAGCACTAAAAATACCATTTTAAAGAAATATGATGGAAGATTCAAGGACATTTTCCAGGAAGTTTTTGACACTCAATGGAGTCACAAGTTTAAAGCTGCAGGGATATGGTATGAACACCGTCTTATAGATGATATGGTTGCTTATGCTCTCAAAAGTGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGTGATGTGCAGAGTGATTTCTTAGCTCAAGGATTTGGTTCTCTCGGCTTGATGACATCAGTACTGGTTTGCCCAGATGGGAAAACCATTGAAGCAGAGGCAGCCCATGGCACTGTTACACGTCATTATCGGGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATTGCTTCAATTTTTGCCTGGTCACGAGGTCTTGCACATAGGGCAAAGTTGGATGGAAATGCTAGACTGTTGGACTTTACAGAAAAACTGGAAGCAGCTTGCATTGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTTGCACTTCTTGTTCATGGACCTAAGGTTTCTAGATACCAGTATTTGAATACTGAAGAGTTCATTGATGCTGTAGCCAAGGAGCTGCAAACAAGATTATCTTCACAATCGAAGCTGTAATGTTCAAGATGAATGTGCCCAATAAATGTTCTCCATTTCCTTTCTTGAAGGAGGGGAATTCTATTGCTTTTGAGTTAAACATTTTAAAGCAATACCTTTAAGGTCACCAAAATTCTGATGCATCACTGATTGCATGTTGCTTCCTTCAGCCATAAGAACTCAACATTTGAAGAGCTCATGTCATGTATACCACAAACTCAATAATATCTTTTCATTGTCAAAACAGCAGTGCTACTTTGAAGGTCCTCACAACAATATTAAAGACATTAAAACATAGGGAGAAAGAGTGTCTTCAAATGAATTTACATGTCTGTTTACAATGTTTATTTCTCAGAGATGTCTTCAATTTTCTTTAGGGAAAGAGGTGGAAGCAACACTTTGTACTGTATATTCTTGTCAAAGAAGTATATTTTTAACTGAGTATATGACTTTTACTACTAAAAATACTCGAAATGTATGTAAGATCGATCACCAAAATTCTAATGCA

Coding sequences of Glyma.15g266700

Limit To All Plant Sequences

>Glyma.15g266700.1 sequence-type=CDS polypeptide=Glyma.15g266700.1.p locus=Glyma.15g266700 ID=Glyma.15g266700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTTCAGAAGATAAGGGTTGGCAACCCCATCGTCGAAATGGATGGGGATGAAATGACCCGAGTGATTTGGAAACTGATAAAAGATAAGCTTATTTTTCCTTATTTGGAGCTGGATATTAAGTATTTTGACCTTGGCCTTCCTCATCGCGATGCCACTAATGATAGAGTTACTATTGAAAGTGCTGAAGCTACACTCAAGTATAATGTAGCTATCAAATGTGCTACTATAACTCCAGATGAAGCTCGCATCAAGGAGTTTAACTTAAAGCAAATGTGGAGAAGTCCAAATGGGACGATCCGGAACATTCTAAATGGTACAGTTTTTAGAGAGCCAATTATCTGTAAGAACATTCCTCGTCTTGTTTCAGGATGGACAAAGCCAATATGCATTGGAAGACATGCTTTTGGAGACCAATATCGGGCAACTGATACAGTTATAAAAGGCCCAGGAAAGCTAAAATTGGTTTTTGCACCCAGTGGAAATGAAGGCATTAAAGAGCTAGAGGTCTATAACTTTACTGGTGACGGAGGCATAGCTTTGTCCATGTATAATACTGATGAGTCCATTCGAGCTTTTGCTGAGGCTTCGATGAACTTTGCTTACCAGAAGAAATGGCCTCTCTATCTTAGCACTAAAAATACCATTTTAAAGAAATATGATGGAAGATTCAAGGACATTTTCCAGGAAGTTTTTGACACTCAATGGAGTCACAAGTTTAAAGCTGCAGGGATATGGTATGAACACCGTCTTATAGATGATATGGTTGCTTATGCTCTCAAAAGTGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGTGATGTGCAGAGTGATTTCTTAGCTCAAGGATTTGGTTCTCTCGGCTTGATGACATCAGTACTGGTTTGCCCAGATGGGAAAACCATTGAAGCAGAGGCAGCCCATGGCACTGTTACACGTCATTATCGGGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATTGCTTCAATTTTTGCCTGGTCACGAGGTCTTGCACATAGGGCAAAGTTGGATGGAAATGCTAGACTGTTGGACTTTACAGAAAAACTGGAAGCAGCTTGCATTGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTTGCACTTCTTGTTCATGGACCTAAGGTTTCTAGATACCAGTATTTGAATACTGAAGAGTTCATTGATGCTGTAGCCAAGGAGCTGCAAACAAGATTATCTTCACAATCGAAGCTGTAA

>Glyma.15g266700.2 sequence-type=CDS polypeptide=Glyma.15g266700.2.p locus=Glyma.15g266700 ID=Glyma.15g266700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGAGAAGTCCAAATGGGACGATCCGGAACATTCTAAATGGTACAGTTTTTAGAGAGCCAATTATCTGTAAGAACATTCCTCGTCTTGTTTCAGGATGGACAAAGCCAATATGCATTGGAAGACATGCTTTTGGAGACCAATATCGGGCAACTGATACAGTTATAAAAGGCCCAGGAAAGCTAAAATTGGTTTTTGCACCCAGTGGAAATGAAGGCATTAAAGAGCTAGAGGTCTATAACTTTACTGGTGACGGAGGCATAGCTTTGTCCATGTATAATACTGATGAGTCCATTCGAGCTTTTGCTGAGGCTTCGATGAACTTTGCTTACCAGAAGAAATGGCCTCTCTATCTTAGCACTAAAAATACCATTTTAAAGAAATATGATGGAAGATTCAAGGACATTTTCCAGGAAGTTTTTGACACTCAATGGAGTCACAAGTTTAAAGCTGCAGGGATATGGTATGAACACCGTCTTATAGATGATATGGTTGCTTATGCTCTCAAAAGTGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGTGATGTGCAGAGTGATTTCTTAGCTCAAGGATTTGGTTCTCTCGGCTTGATGACATCAGTACTGGTTTGCCCAGATGGGAAAACCATTGAAGCAGAGGCAGCCCATGGCACTGTTACACGTCATTATCGGGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATTGCTTCAATTTTTGCCTGGTCACGAGGTCTTGCACATAGGGCAAAGTTGGATGGAAATGCTAGACTGTTGGACTTTACAGAAAAACTGGAAGCAGCTTGCATTGGAACAGTTGAATTGGGAAAGATGACAAAGGATCTTGCACTTCTTGTTCATGGACCTAAGGTTTCTAGATACCAGTATTTGAATACTGAAGAGTTCATTGATGCTGTAGCCAAGGAGCTGCAAACAAGATTATCTTCACAATCGAAGCTGTAA

Predicted protein sequences of Glyma.15g266700

Limit To All Plant Sequences

>Glyma.15g266700.1.p sequence-type=predicted peptide transcript=Glyma.15g266700.1 locus=Glyma.15g266700 ID=Glyma.15g266700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGFQKIRVGNPIVEMDGDEMTRVIWKLIKDKLIFPYLELDIKYFDLGLPHRDATNDRVTIESAEATLKYNVAIKCATITPDEARIKEFNLKQMWRSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDTVIKGPGKLKLVFAPSGNEGIKELEVYNFTGDGGIALSMYNTDESIRAFAEASMNFAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWSHKFKAAGIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACIGTVELGKMTKDLALLVHGPKVSRYQYLNTEEFIDAVAKELQTRLSSQSKL*

>Glyma.15g266700.2.p sequence-type=predicted peptide transcript=Glyma.15g266700.2 locus=Glyma.15g266700 ID=Glyma.15g266700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDTVIKGPGKLKLVFAPSGNEGIKELEVYNFTGDGGIALSMYNTDESIRAFAEASMNFAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWSHKFKAAGIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACIGTVELGKMTKDLALLVHGPKVSRYQYLNTEEFIDAVAKELQTRLSSQSKL*

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