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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12670.1 | AT | CTP synthase family protein | JGI | N/A | IEA |
| GO:0006221 | GO-bp | pyrimidine nucleotide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006221 | GO-bp | pyrimidine nucleotide biosynthetic process | JGI | N/A | IEA |
| GO:0006241 | GO-bp | CTP biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006541 | GO-bp | glutamine metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006541 | GO-bp | glutamine metabolic process | JGI | N/A | IEA |
| GO:0044210 | GO-bp | 'de novo' CTP biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0003883 | GO-mf | CTP synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0003883 | GO-mf | CTP synthase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | EnsemblGenomes | N/A | IEA |
| KOG2387 | KOG | CTP synthase (UTP-ammonia lyase) | JGI | N/A | IEA |
| PTHR11550 | Panther | CTP SYNTHASE | JGI | N/A | IEA |
| PF00117 | PFAM | Glutamine amidotransferase class-I | JGI | N/A | IEA |
| PF06418 | PFAM | CTP synthase N-terminus | JGI | N/A | IEA |
| GLUTAMINDEG-PWY | SoyCyc9 | L-glutamine degradation I | Plant Metabolic Network | ISS | |
| PWY-5687 | SoyCyc9 | pyrimidine ribonucleotides interconversion | Plant Metabolic Network | ISS | |
| PWY-7176 | SoyCyc9 | UTP and CTP de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7177 | SoyCyc9 | UTP and CTP dephosphorylation II | Plant Metabolic Network | ISS | |
| PWY-7185 | SoyCyc9 | UTP and CTP dephosphorylation I | Plant Metabolic Network | ISS | |
| PWY-7196 | SoyCyc9 | superpathway of pyrimidine ribonucleosides salvage | Plant Metabolic Network | ISS | |
| PWY-7208 | SoyCyc9 | superpathway of pyrimidine nucleobases salvage | Plant Metabolic Network | ISS | |
| PWY-7211 | SoyCyc9 | superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY0-162 | SoyCyc9 | superpathway of pyrimidine ribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-41501 | SoyCyc9-rxn | CTP synthase | Plant Metabolic Network | ISS |
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Glyma.15g266600 not represented in the dataset |
Glyma.15g266600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g161000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g42080 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g266600.1 sequence-type=CDS polypeptide=Glyma.15g266600.1.p locus=Glyma.15g266600 ID=Glyma.15g266600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGTATGTGTTGGTGACTGGTGGTGTTGTGAGTGGACTTGGGAAAGGAGTCACTGCCAGCAGTATTGGGTTAATCCTCAAGGCCTGTGGTCTTAGAGTTACCTCTATCAAGATTGACCCCTACTTGAACACTGATGCGGGAACTATGTCTCCTTTTGAGCATGGAGAGGTTTTTGTCTTAGATGATGGTGGTGAGGTTGACCTTGATCTTGGAAACTATGAACGTTTCTTGGACATCAAATTAACTTGTGACAATAATATCACTACTGGAAAAATATATCAGTCTGTTATTGAGAAGGAGAGAAGAGGAGATTATCTTGGAAAGACTGTACAGGTTGTTCCGCACGTAACAGATGCTATCCAAGAGTGGATAGAACGTGTAGCAAAGATACCAGTTGATGGGAAAGAAGGGCCAGCTGATGTTTGTGTCATTGAATTGGGTGGAACTATAGGGGATATTGAGTCCATGCCTTTTATTGAAGCACTTGGTCAATTCTCATACCGTGTAGGCCCTGGCAACTTCTGTTTGGTTCATGTCAGCCTGGTTCCTATTCTCCATGTTGTTGGTGAACCGAAAACAAAGCCAACTCAGCACAGTGTTCGTCAACTTAGAGGATTAGGTTTGACCCCTAATCTTCTTGCTTGTCGCAGTTCGAAGGAACTTGATGACAATGTCAAGGCAAAACTTGCTCAATTCTGTCATGTGCCGTTGTCAAACATACTTACTCTCCATGACGTTCCAAATATTTGGCACATTCCTTTGCTATTGAAAGACCAGAAGGCACATGAGGCGATCCTGAAAGCATTAAACTTGCTAGGTGTTGCTGCAGAGCCTAATTTGAAGGAGTGGACTTCAAGGACAAAAGTTTATGACAGATGTCATGAAATTGTTAGAATTGCAATGGTGGGAAAATACACTGGCCTTTCAGATGCATATCTTTCTGTTCTGAAGGCACTTTTACATGCTTCTGTTGCTCGAAACCGTAAACTTATTGTGGACTGGGTTCCAGCTGGGGATCTTGAAGATGCTACTTATAATGAGGATCCTGAGGCATATAAAGCTGCTTGGAGTCTTTTAAAGGGTGCTAATGGGGTTCTAGTTCCAGGAGGTTTTGGTGATAGAGGAGTGCAAGGGAAAATTCTTGCTGCTAAGTATGCTCGAGAACATAATGTTCCATTTCTCGGCATTTGCCTGGGAATGCAAATTGCTGTTATTGAGTTTGCACGATCTGTTCTCGGTCTGCATGATGCTACTAGCACAGAATTCAATCCTGAAACCAAGACCCCTTGTGTCATATTTATGCCAGAAGGCTCAAAGACTCATATGGGAGGAACTATGCGTCTTGGCTCAAGAAGAACTTACTTTGAAGTTGCTGACTGCAAATCCGCAAAATTGTATGGCAATGTAAGCTTTGTTGATGAGCGACATCGGCATAGATATGAGGTTAATCCTGACATGATATCACCGCTAGAGAATGCTGGTCTATCTTTTGTTGGCAAAGATGAAACTGGGAGGCGTATGGAGATAGTTGAGTTGCCTAGCCATCCTTTTTTTATTGGCGTTCAGTTTCACCCTGAGTTCAAGTCCAGACCAGGGAAACCTTCTCCGCTCTTCTCAGGATTAATAGCAGCAGCAAGTGAATCTAGGAGGACAATCATGGTGCCAAGTAATGGTCACGCCAAGTTAACTAATGGAAATGGAATGTGCAATGGACACTCACCAAAACTGAAAGCACACCAAAAGGGAAATGGCTTCAATTCATCCAATGGTTCCTTAAATGGTATATATACCAATGGCAATGGGGTGTATGTGGATGGTAGTTGTTAG
>Glyma.15g266600.1.p sequence-type=predicted peptide transcript=Glyma.15g266600.1 locus=Glyma.15g266600 ID=Glyma.15g266600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKYVLVTGGVVSGLGKGVTASSIGLILKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTCDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHVTDAIQEWIERVAKIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPILHVVGEPKTKPTQHSVRQLRGLGLTPNLLACRSSKELDDNVKAKLAQFCHVPLSNILTLHDVPNIWHIPLLLKDQKAHEAILKALNLLGVAAEPNLKEWTSRTKVYDRCHEIVRIAMVGKYTGLSDAYLSVLKALLHASVARNRKLIVDWVPAGDLEDATYNEDPEAYKAAWSLLKGANGVLVPGGFGDRGVQGKILAAKYAREHNVPFLGICLGMQIAVIEFARSVLGLHDATSTEFNPETKTPCVIFMPEGSKTHMGGTMRLGSRRTYFEVADCKSAKLYGNVSFVDERHRHRYEVNPDMISPLENAGLSFVGKDETGRRMEIVELPSHPFFIGVQFHPEFKSRPGKPSPLFSGLIAAASESRRTIMVPSNGHAKLTNGNGMCNGHSPKLKAHQKGNGFNSSNGSLNGIYTNGNGVYVDGSC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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