SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79550.1 | AT | phosphoglycerate kinase | JGI | N/A | IEA |
| GO:0006096 | GO-bp | glycolytic process | EnsemblGenomes | N/A | IEA |
| GO:0006096 | GO-bp | glycolysis | JGI | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0004618 | GO-mf | phosphoglycerate kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004618 | GO-mf | phosphoglycerate kinase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG1367 | KOG | 3-phosphoglycerate kinase | JGI | N/A | IEA |
| PTHR11406 | Panther | PHOSPHOGLYCERATE KINASE | JGI | N/A | IEA |
| PF00162 | PFAM | Phosphoglycerate kinase | JGI | N/A | IEA |
| CALVIN-PWY | SoyCyc9 | Calvin-Benson-Bassham cycle | Plant Metabolic Network | ISS | |
| GLUCONEO-PWY | SoyCyc9 | gluconeogenesis I | Plant Metabolic Network | ISS | |
| GLYCOLYSIS | SoyCyc9 | glycolysis I (from glucose 6-phosphate) | Plant Metabolic Network | ISS | |
| PHOTOALL-PWY | SoyCyc9 | oxygenic photosynthesis | Plant Metabolic Network | ISS | |
| PWY-1042 | SoyCyc9 | glycolysis IV (plant cytosol) | Plant Metabolic Network | ISS | |
| PWY-5464 | SoyCyc9 | superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | Plant Metabolic Network | ISS | |
| PWY-5484 | SoyCyc9 | glycolysis II (from fructose 6-phosphate) | Plant Metabolic Network | ISS | |
| PWY-7345 | SoyCyc9 | superpathway of anaerobic sucrose degradation | Plant Metabolic Network | ISS | |
| SUCSYN-PWY | SoyCyc9 | sucrose biosynthesis I (from photosynthesis) | Plant Metabolic Network | ISS | |
| GN7V-41144 | SoyCyc9-rxn | phosphoglycerate kinase | Plant Metabolic Network | ISS |
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Glyma.15g262100 not represented in the dataset |
Glyma.15g262100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g165400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g41550 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g262100.1 sequence-type=CDS polypeptide=Glyma.15g262100.1.p locus=Glyma.15g262100 ID=Glyma.15g262100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTGATTTGAAGGGGAAGAGGGTATTCGTGAGGGTCGATCTGAACGTGCCTTTGGATGACAACCTTAACATCACCGATGACACTAGAGTCCGTGCTGCTGTTCCCACCATCAAGTACTTGACTGGTTATGGTGCTAAAGTGATCCTTTCTAGCCATTTGGGACGTCCAAAAGGTGTAACACCTAAATACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTTGGAATTGAGGTTACGATGGCCAATGACTCTATTGGGGAGGAAGTTGAAAAGTTGGTTACACAACTTCCAGAAGGTGGTGTTTTGCTTCTAGAGAATGTGAGGTTCTACAAGGAGGAAGAGAAGAATGATCCTGAATTTGCAAAGAAGTTGGCTTCTCTAGCTGATCTCTATGTGAATGATGCATTTGGCACTGCCCACAGAGCTCATGCTTCTACAGAAGGAGTTGCCAAATACTTGAAGCCCTCTGTTGCAGGATTCCTAATGCAGAAGGAGCTTGATTATCTAGTTGGGGCTGTGTCAAACCCCAAGAGACCATTTGCTGCTATTGTCGGTGGATCGAAGGTGTCTTCCAAGATTGGAGTTATTGAATCCTTGTTGGAGAAAGTTAATGTTCTCTTGCTTGGTGGAGGAATGATCTTTACCTTTTACAAGGCTCAGGGTTATTCAGTTGGGTCATCTCTTGTGGAGGAAGACAAGCTTAGCCTTGCAACTACACTTCTTGAAAAGGCCAAGGCTAAAGGGGTTTCTTTGTTGCTTCCAACTGATGTTGTCATAGCAGACAAGTTTGCTGCTGATGCTAACAGCAAGACTGTGCCGGCATCAAGCATCCCAGATGGGTGGATGGGGTTGGATATTGGTCCTGATTCCATCAAGACATTTGGTGAAGCATTGGATACGACTCAGACCATTATTTGGAATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATCATTGGAGGAGGTGACTCCGTTGCCGCTGTGGAGAAGGTTGGACTTGCAGACAAGATGAGCCACATCTCCACTGGTGGTGGTGCCAGCTTAGAGCTTCTTGAGGGAAAGCAACTCCCTGGTGTCCTTGCTCTTGATGATGCTTGA
>Glyma.15g262100.1.p sequence-type=predicted peptide transcript=Glyma.15g262100.1 locus=Glyma.15g262100 ID=Glyma.15g262100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATKRSVGTLKEGDLKGKRVFVRVDLNVPLDDNLNITDDTRVRAAVPTIKYLTGYGAKVILSSHLGRPKGVTPKYSLKPLVPRLSQLLGIEVTMANDSIGEEVEKLVTQLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVNVLLLGGGMIFTFYKAQGYSVGSSLVEEDKLSLATTLLEKAKAKGVSLLLPTDVVIADKFAADANSKTVPASSIPDGWMGLDIGPDSIKTFGEALDTTQTIIWNGPMGVFEFDKFATGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKQLPGVLALDDA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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