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Report for Sequence Feature Glyma.15g261900

Feature Type:gene_model
Chromosome:Gm15
Start:49422914
stop:49426618
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g261900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56190.1AT Phosphoglycerate kinase family protein JGI N/AIEA
AT3G12780.1AT phosphoglycerate kinase 1 JGI N/AIEA
GO:0006096GO-bp glycolytic process EnsemblGenomesN/AIEA
GO:0006096GO-bp glycolysis JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0004618GO-mf phosphoglycerate kinase activity EnsemblGenomesN/AIEA
GO:0004618GO-mf phosphoglycerate kinase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG1367 KOG 3-phosphoglycerate kinase JGI N/AIEA
PTHR11406Panther PHOSPHOGLYCERATE KINASE JGI N/AIEA
PF00162PFAM Phosphoglycerate kinase JGI N/AIEA
CALVIN-PWYSoyCyc9 Calvin-Benson-Bassham cycle Plant Metabolic Network ISS
GLUCONEO-PWYSoyCyc9 gluconeogenesis I Plant Metabolic Network ISS
GLYCOLYSISSoyCyc9 glycolysis I (from glucose 6-phosphate) Plant Metabolic Network ISS
PHOTOALL-PWYSoyCyc9 oxygenic photosynthesis Plant Metabolic Network ISS
PWY-1042SoyCyc9 glycolysis IV (plant cytosol) Plant Metabolic Network ISS
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PWY-5484SoyCyc9 glycolysis II (from fructose 6-phosphate) Plant Metabolic Network ISS
PWY-7345SoyCyc9 superpathway of anaerobic sucrose degradation Plant Metabolic Network ISS
SUCSYN-PWYSoyCyc9 sucrose biosynthesis I (from photosynthesis) Plant Metabolic Network ISS
GN7V-62886SoyCyc9-rxn phosphoglycerate kinase Plant Metabolic Network ISS

Expression Patterns of Glyma.15g261900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g261900
ParalogEvidenceComments
Glyma.08g165500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g261900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g41540 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g261900
>Glyma.15g261900.2 sequence-type=transcript locus=Glyma.15g261900 ID=Glyma.15g261900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTGAAATACATGAGTGAAAAGCAAGGAAGATCTTGAACCTCTCCTGAACGATAAGAGAAATCCAAAATCCTCTCACCACACCCAATCGTTCCCGCGTTGTCCTCCACGTCCTCATCCTTTCATCACCTCTCTCTTCCACCAAACAATAAAAACCTCCAAACCCACTCCAGTTAACTCCATACActctctctctctctctctctctctctctACAATGGCCTCAGCCGCAGCCCCCACAACTTTctctctcctccactccaccaccccggcctcctcctcctccgccacctccgcctccccctcgcgcgtgcagctctcctcctccctccGCTCGCGCCCGCTCGCGCGCCGCCTTGGCTTCGCCGCGGCGGACCCGCTGCTCGCGGCGAATGTCGCAGCGCGCGTCGCGGCGGTGAGAGGAGGAAAGGGCGCGAGGGGGGTGGTGTCGATGGCGAAGAAGAGCGTGGGGGAGCTGAGCGCGGCGGACCTGAAGGGGAAGAAGGTCTTCGTCAGGGCCGACCTCAACGTCCCGCTCGACGACAACCAGAACATCACCGACGACACCAGAATTCGCGCCGCCATTCCCACCATCAAACACCTAATCCAAAACGGCGCCAAAGTTATTCTCTCCAGCCACTTGGGGAGGCCGAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTGCCCCGGCTTTCTGAGCTCATTGGTATCCAGGTTGTCAAGGCTGAAGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCTCTTCCAGATGGAGGTGTTCTTCTTCTAGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCCGAGCATGCAAAAAAGCTTGCCTCTCTGGCAGATCTGTTTGTGAATGATGCATTTGGTACTGCTCACAGGGCACATGCATCAACAGAGGGTGTTACTAAATACCTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGTCGTGCCAGCATCTGCCATCCCTGATGGCTGGATGGGATTGGATATTGGTCCAGATTCTGTTAAATCATTCAGTGAAGCATTGGATACTACCCAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGTACAGAGGCTATTGCAAAGAAGCTGGCTGATCTCAGTGGAAAGGGGGTGACCACAATTATCGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCTAGTGTCATGAGCCACATATCTACTGGTGGTGGTGCCAGTTTGGAGTTATTGGAAGGCAAAGAGCTTCCAGGAGTCCTTGCTCTCGATGAAGCCGTCCCAGTTGCCGTGTAAGACAATTTTCAGCTTGGAAAATTTTTCCATCCTCAGATTTCGGTGTTGTCAATCTTGTAAAAGAGCATATGTTGTAGGACCCTTCGGAGTCTGTTAGTGTAAATTTTATCATGCTTGAGTTATTATTGGCTTCACACATAAATTGCGTGTAACTGTAAACCCTGGCTGAGAGCCATAAATTCGAATAAATCTTTTAGTTGCTGCCAGAAGCTTTTTGCACTTTGCTTTTATATTATGTCAACTCCTGATTCTTGAATATGAACCTATGAACCAAGTTTAGCCTTTGGAGTTGGCACTGGTTGTATCCAATGACATGACTTACAATTTGTCAATAAACGTGGACACCAATGAATTCTCGTG
Coding sequences of Glyma.15g261900
>Glyma.15g261900.1 sequence-type=CDS polypeptide=Glyma.15g261900.1.p locus=Glyma.15g261900 ID=Glyma.15g261900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCAGCCGCAGCCCCCACAACTTTCTCTCTCCTCCACTCCACCACCCCGGCCTCCTCCTCCTCCGCCACCTCCGCCTCCCCCTCGCGCGTGCAGCTCTCCTCCTCCCTCCGCTCGCGCCCGCTCGCGCGCCGCCTTGGCTTCGCCGCGGCGGACCCGCTGCTCGCGGCGAATGTCGCAGCGCGCGTCGCGGCGGTGAGAGGAGGAAAGGGCGCGAGGGGGGTGGTGTCGATGGCGAAGAAGAGCGTGGGGGAGCTGAGCGCGGCGGACCTGAAGGGGAAGAAGGTCTTCGTCAGGGCCGACCTCAACGTCCCGCTCGACGACAACCAGAACATCACCGACGACACCAGAATTCGCGCCGCCATTCCCACCATCAAACACCTAATCCAAAACGGCGCCAAAGTTATTCTCTCCAGCCACTTGGGGAGGCCGAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTGCCCCGGCTTTCTGAGCTCATTGGTATCCAGGTTGTCAAGGCTGAAGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCTCTTCCAGATGGAGGTGTTCTTCTTCTAGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCCGAGCATGCAAAAAAGCTTGCCTCTCTGGCAGATCTGTTTGTGAATGATGCATTTGGTACTGCTCACAGGGCACATGCATCAACAGAGGGTGTTACTAAATACCTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGAACTTGATTACCTTGTTGGGGCGGTATCAAGCCCCAAAAGGCCATTTGCTGCCATTGTTGGTGGTTCCAAGGTCTCATCTAAAATTGGAGTGATTGAGTCACTTTTGGAAAAAGTTGACATTCTTCTTCTTGGTGGAGGAATGATCTTCACATTTTACAAGGCACAAGGTCTTTCAGTGGGTTCATCCCTTGTAGAAGAAGATAAGTTGGATCTTGCTACATCACTACTTGCAAAAGCCAAGGAAAAGGGGGTGTCTCTCTTGTTACCAAGTGATGTGGTGATTGCAGACAAATTTGCCCCCGATGCAAACAGCAAGGTCGTGCCAGCATCTGCCATCCCTGATGGCTGGATGGGATTGGATATTGGTCCAGATTCTGTTAAATCATTCAGTGAAGCATTGGATACTACCCAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGTACAGAGGCTATTGCAAAGAAGCTGGCTGATCTCAGTGGAAAGGGGGTGACCACAATTATCGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCTAGTGTCATGAGCCACATATCTACTGGTGGTGGTGCCAGTTTGGAGTTATTGGAAGGCAAAGAGCTTCCAGGAGTCCTTGCTCTCGATGAAGCCGTCCCAGTTGCCGTGTAA

>Glyma.15g261900.2 sequence-type=CDS polypeptide=Glyma.15g261900.2.p locus=Glyma.15g261900 ID=Glyma.15g261900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCAGCCGCAGCCCCCACAACTTTCTCTCTCCTCCACTCCACCACCCCGGCCTCCTCCTCCTCCGCCACCTCCGCCTCCCCCTCGCGCGTGCAGCTCTCCTCCTCCCTCCGCTCGCGCCCGCTCGCGCGCCGCCTTGGCTTCGCCGCGGCGGACCCGCTGCTCGCGGCGAATGTCGCAGCGCGCGTCGCGGCGGTGAGAGGAGGAAAGGGCGCGAGGGGGGTGGTGTCGATGGCGAAGAAGAGCGTGGGGGAGCTGAGCGCGGCGGACCTGAAGGGGAAGAAGGTCTTCGTCAGGGCCGACCTCAACGTCCCGCTCGACGACAACCAGAACATCACCGACGACACCAGAATTCGCGCCGCCATTCCCACCATCAAACACCTAATCCAAAACGGCGCCAAAGTTATTCTCTCCAGCCACTTGGGGAGGCCGAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTGCCCCGGCTTTCTGAGCTCATTGGTATCCAGGTTGTCAAGGCTGAAGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCTCTTCCAGATGGAGGTGTTCTTCTTCTAGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCCGAGCATGCAAAAAAGCTTGCCTCTCTGGCAGATCTGTTTGTGAATGATGCATTTGGTACTGCTCACAGGGCACATGCATCAACAGAGGGTGTTACTAAATACCTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGTCGTGCCAGCATCTGCCATCCCTGATGGCTGGATGGGATTGGATATTGGTCCAGATTCTGTTAAATCATTCAGTGAAGCATTGGATACTACCCAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGTACAGAGGCTATTGCAAAGAAGCTGGCTGATCTCAGTGGAAAGGGGGTGACCACAATTATCGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCTAGTGTCATGAGCCACATATCTACTGGTGGTGGTGCCAGTTTGGAGTTATTGGAAGGCAAAGAGCTTCCAGGAGTCCTTGCTCTCGATGAAGCCGTCCCAGTTGCCGTGTAA
Predicted protein sequences of Glyma.15g261900
>Glyma.15g261900.1.p sequence-type=predicted peptide transcript=Glyma.15g261900.1 locus=Glyma.15g261900 ID=Glyma.15g261900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASAAAPTTFSLLHSTTPASSSSATSASPSRVQLSSSLRSRPLARRLGFAAADPLLAANVAARVAAVRGGKGARGVVSMAKKSVGELSAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIQVVKAEDSIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNDPEHAKKLASLADLFVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDLATSLLAKAKEKGVSLLLPSDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSVKSFSEALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEAVPVAV*

>Glyma.15g261900.2.p sequence-type=predicted peptide transcript=Glyma.15g261900.2 locus=Glyma.15g261900 ID=Glyma.15g261900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASAAAPTTFSLLHSTTPASSSSATSASPSRVQLSSSLRSRPLARRLGFAAADPLLAANVAARVAAVRGGKGARGVVSMAKKSVGELSAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIQVVKAEDSIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNDPEHAKKLASLADLFVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKVVPASAIPDGWMGLDIGPDSVKSFSEALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEAVPVAV*






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