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Report for Sequence Feature Glyma.15g258000

Feature Type:gene_model
Chromosome:Gm15
Start:48810734
stop:48813190
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19260.1AT TTF-type zinc finger protein with HAT dimerisation domain JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005654GO-cc nucleoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000981GO-mf RNA polymerase II transcription factor activity, sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
PTHR11697Panther GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN JGI N/AIEA
PTHR11697:SF9Panther JGI N/AIEA
PF05699PFAM hAT family C-terminal dimerisation region JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g258000 not represented in the dataset

Glyma.15g258000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Corresponding NameAnnotation VersionEvidenceComments
Glyma15g41011 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.15g258000.1 sequence-type=CDS polypeptide=Glyma.15g258000.1.p locus=Glyma.15g258000 ID=Glyma.15g258000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGAGATTTTTGGTTGATAGAGAAAATATTGAGAATGTGAATGTTGTGCAACCGGAAGCTGAATTAGAACCACCACTTAATAATGTGGTTAATGAGTTTAATCCAAATGAGATTGTGCGTGATCCAGGTCGTAGGAAACAAATTAATGAGTATGCTCCGGATATTCAAGACCAAGTGAGGAGGGCATATATATTGAAGGGTCCAATGCAACCAGATTTGTCAAACTTTCCTCGTACTCAATTTGGAAGTGTTAAAAGAGCATTTAGTAAATCATGGTATAAGAATTATACATGGTTAGAATACAATGAGATAAAGGATGCAGCTTATTGTTTTTATTGTTTTCTATTTAAGCAACCCGGGAGGGCCGAGCACTTTGGTTTTGAAGTCTTCACTAAAAGCGGATATAGAGATTGGAAGCATGCATCTCAAGGCTTGAAAGGTCATGTTGGTAGTCATAATAGTTTGCACAACTCATGTGTCAAGCACTACAATGATTATAATAATCAAAGACAAAGTGTGACAAGTAAGTTTGCTAAAGCAACCAAGGAATCAGAAGAATTGTATAAGATTCGTTTGACTTGTTCTTTAGATTGTTCAAGATATCTCATAGCACAAGGCATGGCTTTCCGTGGCCATGATGAATCCTCTACTTCGCTAAATAAGGGCAATTTTAGAGAGATGGTAGATTGGGTAAAATCTCAGAATGAACAAGTGAGGGATGCTTTTGACCGTGGTGGAAAAAATTGCAAAATGACTTGCAGTGACATTCAAAAGGAGCTTGCAACGTGTTGTGCACATGAAGTTACCAAGGTGATTATGGAAGAGCTTGGTGATAGACAATTCTCCGTGCTTATTGACGAGTCACGTGATATATCCGTCAAAGAGCAAATGGCGGTGATGTTGAGGTTTTTGAATGACAAAGGGAATGTTGTGGAACGATTTATTGCTCTACATCATGTCACAGATACTTCATCTAAGTCATTAAAGGATGCTCTTTATGGTATTCTTGATAAGTACACATTATCTATTTCAAGGATACGAGGGCAAGGATATGATGGAGCTTCAAATATGAGAGGTGAATTTAATGGTTTGCAAAGAAAAATTCTAGATGAAAATCCTTATGCTTTCTATGTCCATTGTTATGCTCACCGTTTGCAATTGGTTGTTGTGTCTGTTACTAGTAGTTGCTCATCTATTCATGATTTCTTTGAGTACATCACCTTGATTGTGAATACAACAAGTGCATCTTGTAAGAGGAGGGATGCTTTGACAGAGGCACAACACAAAGATATTTTAAATAAACTTGAGAGTGGTGAGATATCTAGAGGAAGGGGCTTACACCAATCATCTAGTCTCACTAGACCCGGGGATACTAGATGGGGTTCACATCATACTACATTGCTTCGTTTGGATCAAATGTGGTCCTCCGTGTTAAAGGTGCTTAGTATGGTTGATGAAGATGGACGTGGACCATCTCAAGCAGCAGGTTTGATAGAAAAAATGGAGAGCTTTAAATTTGCTTTTATTTTGAGGTTAATGTTAAAGTTGTTTGGTATCACAAACGAGCTTTCAAATGTATTGCAAAGAAAAGATCTTAATATTGTGAATGCCATGGAATTAGTTGATGTTGTCAAAGCTCGGTTGGGCACAATGAGAGAGAGTGGCTGGAATAATTTTTTTGCCGATGTCCAAGGATTTTGTGTAGCTAAAAGTATTCCGGTACCAAATATGGATGACGAAATACCGGTTCGGGGTCGTTCAAGAGCAGAAGGGAGGACTATCACTAATCTTCATCATTACCGTGCAAAGATTTTTTATGTTGTTATTGATAAAATATGTGTGGAGATGGATCACCGCTTTAGTGAAGGAAGTAACATTATACTTGATTGCTTCTCATGTCTTGACCCCAAGAACTCTTTCTCCAAGTTTGATGTTGATAAGCTTGCTCGTCTTGCTGATATTTATCATGCAGACTTTTCTGATGATGACCGAGGAACAATTAGGGATCAACTTGAAACTTATGTGCTTCAAGTGAGAAGAAATGCTTCTTTTTCCACTTGTGAAGATGTTCAAAGTTTGGCTATGAAGATGGTTCAAACTGAGAAACATTTGGTATTTCCATTGGTTTATAAACTTATTGAGCTAGCTTTGATATTGCCGGTGTCGACAGCATCCGTTGAAACAGCTTTTTCAGCAATGAAGATTATCAAGTCTAAATTGCGCAATAAGATCAACGATGTGTGGTTCAATGACTTGATGGTATGTTACACCGAGCGGGAGATATTCAAGTCGCTTGATGATATTGATATTATTCGAACATTTACCGCAAAGAAGTCTCGGAAAGGACACTTGCCTCGTAATTTTATTTAA

>Glyma.15g258000.1.p sequence-type=predicted peptide transcript=Glyma.15g258000.1 locus=Glyma.15g258000 ID=Glyma.15g258000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRRFLVDRENIENVNVVQPEAELEPPLNNVVNEFNPNEIVRDPGRRKQINEYAPDIQDQVRRAYILKGPMQPDLSNFPRTQFGSVKRAFSKSWYKNYTWLEYNEIKDAAYCFYCFLFKQPGRAEHFGFEVFTKSGYRDWKHASQGLKGHVGSHNSLHNSCVKHYNDYNNQRQSVTSKFAKATKESEELYKIRLTCSLDCSRYLIAQGMAFRGHDESSTSLNKGNFREMVDWVKSQNEQVRDAFDRGGKNCKMTCSDIQKELATCCAHEVTKVIMEELGDRQFSVLIDESRDISVKEQMAVMLRFLNDKGNVVERFIALHHVTDTSSKSLKDALYGILDKYTLSISRIRGQGYDGASNMRGEFNGLQRKILDENPYAFYVHCYAHRLQLVVVSVTSSCSSIHDFFEYITLIVNTTSASCKRRDALTEAQHKDILNKLESGEISRGRGLHQSSSLTRPGDTRWGSHHTTLLRLDQMWSSVLKVLSMVDEDGRGPSQAAGLIEKMESFKFAFILRLMLKLFGITNELSNVLQRKDLNIVNAMELVDVVKARLGTMRESGWNNFFADVQGFCVAKSIPVPNMDDEIPVRGRSRAEGRTITNLHHYRAKIFYVVIDKICVEMDHRFSEGSNIILDCFSCLDPKNSFSKFDVDKLARLADIYHADFSDDDRGTIRDQLETYVLQVRRNASFSTCEDVQSLAMKMVQTEKHLVFPLVYKLIELALILPVSTASVETAFSAMKIIKSKLRNKINDVWFNDLMVCYTEREIFKSLDDIDIIRTFTAKKSRKGHLPRNFI*







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