Glyma.15g250400

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Report for Sequence Feature Glyma.15g250400

Feature Type:	gene_model
Chromosome:	Gm15
Start:	47840764
stop:	47844683
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g250400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80245.1	AT	Spc97 / Spc98 family of spindle pole body (SBP) component	JGI	N/A	IEA
GO:0031122	GO-bp	cytoplasmic microtubule organization	EnsemblGenomes	N/A	IEA
GO:0051321	GO-bp	meiotic cell cycle	EnsemblGenomes	N/A	IEA
GO:0051415	GO-bp	microtubule nucleation by interphase microtubule organizing center	EnsemblGenomes	N/A	IEA
GO:0090307	GO-bp	mitotic spindle assembly	EnsemblGenomes	N/A	IEA
GO:0000923	GO-cc	equatorial microtubule organizing center	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005874	GO-cc	microtubule	EnsemblGenomes	N/A	IEA
GO:0008275	GO-cc	gamma-tubulin small complex	EnsemblGenomes	N/A	IEA
GO:0005200	GO-mf	structural constituent of cytoskeleton	EnsemblGenomes	N/A	IEA
GO:0043015	GO-mf	gamma-tubulin binding	EnsemblGenomes	N/A	IEA
GO:0051011	GO-mf	microtubule minus-end binding	EnsemblGenomes	N/A	IEA
PTHR19302	Panther	GAMMA TUBULIN COMPLEX PROTEIN	JGI	N/A	IEA
PTHR19302:SF30	Panther		JGI	N/A	IEA

Expression Patterns of Glyma.15g250400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g250400 not represented in the dataset	Glyma.15g250400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g250400

Paralog	Evidence	Comments
Glyma.08g176100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g250400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g40100	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g250400

Limit To All Plant Sequences

>Glyma.15g250400.2 sequence-type=transcript locus=Glyma.15g250400 ID=Glyma.15g250400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGCAGCCAAGACCCTCCACTCCCAGCCTCCCTAGACCTCGATCTTGATCTCGACGCACCTTGCCGTCCCTCGCAGTAGCTGAACCTCACAGAAGAAGCCTCCTTCACCGGCAACGCCAGTGGACCCCCAGAAACCGTCGTCGGCAGCGTTTCGGACGACGAAAATTGCATGCTTCTGGCCGCCTATCCCTGGACGACGGCGACGCATTTGGGATTGAAGACTGACGCCGTCTTCTCGGCCTCTGAAAACAGGTTATAATTTCAATAGGAATTCAGATCTTATAATCCTCAGTTTGATCCTATGAAGGACAGACACTTGAAGAAAAGAATCAAAAGATTGAAAGACATGGTTGAGCCAGATAAAAATTGCGAGACTAGGGTTGAAGATGTTGCTTGGCTTTGCTCCCTTTCAGAGTCTGAGATTGACATGCTGATTAGCTTGAAACTGTTGATCATTCAGCGTGCAAAAATGATGGGTTGTAAGGAGCTGGCTAGTAAATTCAACCTTAAAATGATTCGAGCCATTGCACTTGTTTTGATGGGCCATCTGAAGGAAGAGATAAAAGATTCATCACTTATCCCCAATATGGTTAAATCTACTTCTTTTTTAGATGCTTGCAACCTATTGAAATGTAGCAATGAGGTTGATGCAAATATTGATGAGCTAAGTACAAGTCTTGGTGCTGATATAGAAACTTTTCTTAGAAGTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCCGAGAATGAAAGGTTTGCAGTTATTGGAGGATCTAAAATTTCTAGCTTATCCTTATGGCAACACCTTTACTTTGGCTGTGGAAACTCTCATTTATAGTTTCTTTCTCATTGCCGAATTTTCATGCAAGTTATTTATTATTAGGTTGCTTATAGTTTTTGGTTCTTGACATTTTTCTATTTAGAAATTAGTTGGAGCAAATACCCCGTTATATTTAGAAAATTGTTGCAAGAATGTGTAGCAAGTAAATCCCCATTTTGCCTAGGGAATTTTACATTAATAGTTTTATTTGTATAGAAACACAAGTTAATGAGAGGTGGAAA

Coding sequences of Glyma.15g250400

Limit To All Plant Sequences

>Glyma.15g250400.1 sequence-type=CDS polypeptide=Glyma.15g250400.1.p locus=Glyma.15g250400 ID=Glyma.15g250400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCTGGCCGCCTATCCCTGGACGACGGCGACGCATTTGGGATTGAAGACTGACGCCGTCTTCTCGGCCTCTGAAAACAGACACTTGAAGAAAAGAATCAAAAGATTGAAAGACATGGTTGAGCCAGATAAAAATTGCGAGACTAGGGTTGAAGATGTTGCTTGGCTTTGCTCCCTTTCAGAGTCTGAGATTGACATGCTGATTAGCTTGAAACTGTTGATCATTCAGCGTGCAAAAATGATGGGTTGTAAGGAGCTGGCTAGTAAATTCAACCTTAAAATGATTCGAGCCATTGCACTTGTTTTGATGGGCCATCTGAAGGAAGAGATAAAAGATTCATCACTTATCCCCAATATGGTTAAATCTACTTCTTTTTTAGATGCTTGCAACCTATTGAAATGTAGCAATGAGGTTGATGCAAATATTGATGAGCTAAGTACAAGTCTTGGTGCTGATATAGAAACTTTTCTTAGAAGTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCCGAGAATGA

>Glyma.15g250400.2 sequence-type=CDS polypeptide=Glyma.15g250400.2.p locus=Glyma.15g250400 ID=Glyma.15g250400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGACAGACACTTGAAGAAAAGAATCAAAAGATTGAAAGACATGGTTGAGCCAGATAAAAATTGCGAGACTAGGGTTGAAGATGTTGCTTGGCTTTGCTCCCTTTCAGAGTCTGAGATTGACATGCTGATTAGCTTGAAACTGTTGATCATTCAGCGTGCAAAAATGATGGGTTGTAAGGAGCTGGCTAGTAAATTCAACCTTAAAATGATTCGAGCCATTGCACTTGTTTTGATGGGCCATCTGAAGGAAGAGATAAAAGATTCATCACTTATCCCCAATATGGTTAAATCTACTTCTTTTTTAGATGCTTGCAACCTATTGAAATGTAGCAATGAGGTTGATGCAAATATTGATGAGCTAAGTACAAGTCTTGGTGCTGATATAGAAACTTTTCTTAGAAGTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCCGAGAATGA

Predicted protein sequences of Glyma.15g250400

Limit To All Plant Sequences

>Glyma.15g250400.1.p sequence-type=predicted peptide transcript=Glyma.15g250400.1 locus=Glyma.15g250400 ID=Glyma.15g250400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLAAYPWTTATHLGLKTDAVFSASENRHLKKRIKRLKDMVEPDKNCETRVEDVAWLCSLSESEIDMLISLKLLIIQRAKMMGCKELASKFNLKMIRAIALVLMGHLKEEIKDSSLIPNMVKSTSFLDACNLLKCSNEVDANIDELSTSLGADIETFLRSPPTSKQKKQKVGSRE*

>Glyma.15g250400.2.p sequence-type=predicted peptide transcript=Glyma.15g250400.2 locus=Glyma.15g250400 ID=Glyma.15g250400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKDRHLKKRIKRLKDMVEPDKNCETRVEDVAWLCSLSESEIDMLISLKLLIIQRAKMMGCKELASKFNLKMIRAIALVLMGHLKEEIKDSSLIPNMVKSTSFLDACNLLKCSNEVDANIDELSTSLGADIETFLRSPPTSKQKKQKVGSRE*

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