Report for Sequence Feature Glyma.15g250400
Feature Type: gene_model
Chromosome: Gm15
Start: 47840764
stop: 47844683
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.15g250400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G80245.1 AT
Spc97 / Spc98 family of spindle pole body (SBP) component
JGI N/A IEA
GO:0031122 GO-bp
cytoplasmic microtubule organization
EnsemblGenomes N/A IEA
GO:0051321 GO-bp
meiotic cell cycle
EnsemblGenomes N/A IEA
GO:0051415 GO-bp
microtubule nucleation by interphase microtubule organizing center
EnsemblGenomes N/A IEA
GO:0090307 GO-bp
mitotic spindle assembly
EnsemblGenomes N/A IEA
GO:0000923 GO-cc
equatorial microtubule organizing center
EnsemblGenomes N/A IEA
GO:0005737 GO-cc
cytoplasm
EnsemblGenomes N/A IEA
GO:0005874 GO-cc
microtubule
EnsemblGenomes N/A IEA
GO:0008275 GO-cc
gamma-tubulin small complex
EnsemblGenomes N/A IEA
GO:0005200 GO-mf
structural constituent of cytoskeleton
EnsemblGenomes N/A IEA
GO:0043015 GO-mf
gamma-tubulin binding
EnsemblGenomes N/A IEA
GO:0051011 GO-mf
microtubule minus-end binding
EnsemblGenomes N/A IEA
PTHR19302 Panther
GAMMA TUBULIN COMPLEX PROTEIN
JGI N/A IEA
PTHR19302:SF30 Panther
JGI N/A IEA
Expression Patterns of Glyma.15g250400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.15g250400
Paralog Evidence Comments
Glyma.08g176100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.15g250400 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma15g40100 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.15g250400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.15g250400.2 sequence-type=transcript locus=Glyma.15g250400 ID=Glyma.15g250400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGCAGCCAAGACCCTCCACTCCCAGCCTCCCTAGACCTCGATCTTGATCTCGACGCACCTTGCCGTCCCTCGCAGTAGCTGAACCTCACAGAAGAAGCCTCCTTCACCGGCAACGCCAGTGGACCCCCAGAAACCGTCGTCGGCAGCGTTTCGGACGACGAAAATTGCATGCTTCTGGCCGCCTATCCCTGGACGACGGCGACGCATTTGGGATTGAAGACTGACGCCGTCTTCTCGGCCTCTGAAAACAGGTTATAATTTCAATAGGAATTCAGATCTTATAATCCTCAGTTTGATCCTATGAAGGACAGACACTTGAAGAAAAGAATCAAAAGATTGAAAGACATGGTTGAGCCAGATAAAAATTGCGAGACTAGGGTTGAAGATGTTGCTTGGCTTTGCTCCCTTTCAGAGTCTGAGATTGACATGCTGATTAGCTTGAAACTGTTGATCATTCAGCGTGCAAAAATGATGGGTTGTAAGGAGCTGGCTAGTAAATTCAACCTTAAAATGATTCGAGCCATTGCACTTGTTTTGATGGGCCATCTGAAGGAAGAGATAAAAGATTCATCACTTATCCCCAATATGGTTAAATCTACTTCTTTTTTAGATGCTTGCAACCTATTGAAATGTAGCAATGAGGTTGATGCAAATATTGATGAGCTAAGTACAAGTCTTGGTGCTGATATAGAAACTTTTCTTAGAAGTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCCGAGAATGAAAGGTTTGCAGTTATTGGAGGATCTAAAATTTCTAGCTTATCCTTATGGCAACACCTTTACTTTGGCTGTGGAAACTCTCATTTATAGTTTCTTTCTCATTGCCGAATTTTCATGCAAGTTATTTATTATTAGGTTGCTTATAGTTTTTGGTTCTTGACATTTTTCTATTTAGAAATTAGTTGGAGCAAATACCCCGTTATATTTAGAAAATTGTTGCAAGAATGTGTAGCAAGTAAATCCCCATTTTGCCTAGGGAATTTTACATTAATAGTTTTATTTGTATAGAAACACAAGTTAATGAGAGGTGGAAA
Coding sequences of Glyma.15g250400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.15g250400.1 sequence-type=CDS polypeptide=Glyma.15g250400.1.p locus=Glyma.15g250400 ID=Glyma.15g250400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCTGGCCGCCTATCCCTGGACGACGGCGACGCATTTGGGATTGAAGACTGACGCCGTCTTCTCGGCCTCTGAAAACAGACACTTGAAGAAAAGAATCAAAAGATTGAAAGACATGGTTGAGCCAGATAAAAATTGCGAGACTAGGGTTGAAGATGTTGCTTGGCTTTGCTCCCTTTCAGAGTCTGAGATTGACATGCTGATTAGCTTGAAACTGTTGATCATTCAGCGTGCAAAAATGATGGGTTGTAAGGAGCTGGCTAGTAAATTCAACCTTAAAATGATTCGAGCCATTGCACTTGTTTTGATGGGCCATCTGAAGGAAGAGATAAAAGATTCATCACTTATCCCCAATATGGTTAAATCTACTTCTTTTTTAGATGCTTGCAACCTATTGAAATGTAGCAATGAGGTTGATGCAAATATTGATGAGCTAAGTACAAGTCTTGGTGCTGATATAGAAACTTTTCTTAGAAGTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCCGAGAATGA
>Glyma.15g250400.2 sequence-type=CDS polypeptide=Glyma.15g250400.2.p locus=Glyma.15g250400 ID=Glyma.15g250400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGACAGACACTTGAAGAAAAGAATCAAAAGATTGAAAGACATGGTTGAGCCAGATAAAAATTGCGAGACTAGGGTTGAAGATGTTGCTTGGCTTTGCTCCCTTTCAGAGTCTGAGATTGACATGCTGATTAGCTTGAAACTGTTGATCATTCAGCGTGCAAAAATGATGGGTTGTAAGGAGCTGGCTAGTAAATTCAACCTTAAAATGATTCGAGCCATTGCACTTGTTTTGATGGGCCATCTGAAGGAAGAGATAAAAGATTCATCACTTATCCCCAATATGGTTAAATCTACTTCTTTTTTAGATGCTTGCAACCTATTGAAATGTAGCAATGAGGTTGATGCAAATATTGATGAGCTAAGTACAAGTCTTGGTGCTGATATAGAAACTTTTCTTAGAAGTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCCGAGAATGA
Predicted protein sequences of Glyma.15g250400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.15g250400.1.p sequence-type=predicted peptide transcript=Glyma.15g250400.1 locus=Glyma.15g250400 ID=Glyma.15g250400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLAAYPWTTATHLGLKTDAVFSASENRHLKKRIKRLKDMVEPDKNCETRVEDVAWLCSLSESEIDMLISLKLLIIQRAKMMGCKELASKFNLKMIRAIALVLMGHLKEEIKDSSLIPNMVKSTSFLDACNLLKCSNEVDANIDELSTSLGADIETFLRSPPTSKQKKQKVGSRE*
>Glyma.15g250400.2.p sequence-type=predicted peptide transcript=Glyma.15g250400.2 locus=Glyma.15g250400 ID=Glyma.15g250400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKDRHLKKRIKRLKDMVEPDKNCETRVEDVAWLCSLSESEIDMLISLKLLIIQRAKMMGCKELASKFNLKMIRAIALVLMGHLKEEIKDSSLIPNMVKSTSFLDACNLLKCSNEVDANIDELSTSLGADIETFLRSPPTSKQKKQKVGSRE*