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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78510.1 | AT | solanesyl diphosphate synthase 1 | JGI | N/A | IEA |
| GO:0008299 | GO-bp | isoprenoid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008299 | GO-bp | isoprenoid biosynthetic process | JGI | N/A | IEA |
| GO:0015979 | GO-bp | photosynthesis | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016765 | GO-mf | transferase activity, transferring alkyl or aryl (other than methyl) groups | EnsemblGenomes | N/A | IEA |
| KOG0776 | KOG | Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase | JGI | N/A | IEA |
| PTHR12001 | Panther | GERANYLGERANYL PYROPHOSPHATE SYNTHASE | JGI | N/A | IEA |
| PTHR12001:SF18 | Panther | SOLANESYL DIPHOSPHATE SYNTHASE 1-RELATED | JGI | N/A | IEA |
| PF00348 | PFAM | Polyprenyl synthetase | JGI | N/A | IEA |
| HEXPPSYN-PWY | SoyCyc9 | hexaprenyl diphosphate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5120 | SoyCyc9 | geranylgeranyl diphosphate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5121 | SoyCyc9 | superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) | Plant Metabolic Network | ISS | |
| PWY-5783 | SoyCyc9 | octaprenyl diphosphate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5805 | SoyCyc9 | nonaprenyl diphosphate biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-5807 | SoyCyc9 | heptaprenyl diphosphate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5863 | SoyCyc9 | superpathway of phylloquinol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5864 | SoyCyc9 | superpathway of plastoquinol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5910 | SoyCyc9 | superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) | Plant Metabolic Network | ISS | |
| PWY-6520 | SoyCyc9 | nonaprenyl diphosphate biosynthesis II | Plant Metabolic Network | ISS | |
| PWYQT-4449 | SoyCyc9 | polyisoprenoid biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-61139 | SoyCyc9-rxn | geranylgeranyl-diphosphate all-trans-nonaprenyl diphosphate synthase | Plant Metabolic Network | ISS |
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Glyma.15g243100 not represented in the dataset |
Glyma.15g243100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g262200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g39070 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g243100.1 sequence-type=CDS polypeptide=Glyma.15g243100.1.p locus=Glyma.15g243100 ID=Glyma.15g243100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATGTCTGTCACAGGCAAAGGCATTGATTTTGCTGGCAAAAACTTGGTCTCTGGCTGCTCTTCAAATGCTTCGTTTGATTGGTACACTGTGAGGAACTATGCCAAGGCGAATAGTAATAATTCTAATGGGTGTGGCAGAGGCCATGGACGTAAATTGGTTTGTTGTAAGAGGAGGAGCACTCAATGTCGGGTTTCTTCTATGAAGACTGCACAGCCTACTGTGAATGGGGGGACTCATGCAATTGAAGGCCTTACCACAGGATTGGACTTGAAGGGTTATTCAGAAGCCCCCATTTCCCCAGCTAGGTTTTTTGAAGCGGTTGCCGATGATTTGCTAACTCTCAATAAAAATCTTCAGTCGATTGTTGGAGCAGAAAATCCTGTTTTGATGTCTGCAGCTGAGCAGATTTTTAGTGCTGGTGGGAAGAGGATGAGACCAGCTCTGGTGTTCTTGGTGTCAAGGGCGACTGCAGAGTTACTTGGCTTGAAGGAACTTACTGTAAAGCATCGACGTTTAGCAGAGATAATTGAAATGATTCATACTGCAAGCTTGATACATGATGATGTACTAGATGAGAGTGACCTTCGACGAGGGAAGAAAACTGTTCATCAAATGTTTGGAACAAGAGTTGCAGTGCTGGCTGGAGACTTCATGTTTGCACAGTCATCATGGTATCTAGCCAACCTTGAAAATATTGAAGTCATTAAACTTATCAGCCAGGTGATCAAAGATTTTGCAAGTGGGGAAATAAAGCAGGCTTCGAGCTTGTTTGATTGTGATGTACAACTTGATGAGTATCTAATTAAGAGCTATTACAAGACAGCGTCGTTGATTGCTGCCAGCACAAAAGGAGCTGCGATCTTTAGTGGTTCTGACAGCAGTGTCACTGAGAAAATGTATGAATATGGAAAGAATCTTGGTCTATCCTTTCAAGTTGTGGATGACATATTGGATTTCACGCAATCAGCGGAGCAACTGGGAAAGCCTGCTGGCAGTGACCTTGCCAAGGGCAACCTGACTGCACCAGTGATTTTTGCACTGGAGAAAGAACCAAAATTGAGGGATATCATTGAGTCTGAATTCAGTGAGGTTGGTTCGCTTGACGAGGCCATCAATTTGGTCAAGAGTTGTGGGGGCATTGAAAGAGCACAAGAGTTAGCAAAAGAGAAAGCTGATCTTGCAATTCAAAGTCTCCAATGCCTACCTCAGAGTGTGTTTCGTTTAGCCCTTGAGGATATGGTGGCATATAACCTTCAACGGATTGCATAA
>Glyma.15g243100.1.p sequence-type=predicted peptide transcript=Glyma.15g243100.1 locus=Glyma.15g243100 ID=Glyma.15g243100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MMSVTGKGIDFAGKNLVSGCSSNASFDWYTVRNYAKANSNNSNGCGRGHGRKLVCCKRRSTQCRVSSMKTAQPTVNGGTHAIEGLTTGLDLKGYSEAPISPARFFEAVADDLLTLNKNLQSIVGAENPVLMSAAEQIFSAGGKRMRPALVFLVSRATAELLGLKELTVKHRRLAEIIEMIHTASLIHDDVLDESDLRRGKKTVHQMFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVQLDEYLIKSYYKTASLIAASTKGAAIFSGSDSSVTEKMYEYGKNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLRDIIESEFSEVGSLDEAINLVKSCGGIERAQELAKEKADLAIQSLQCLPQSVFRLALEDMVAYNLQRIA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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