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Report for Sequence Feature Glyma.15g242900

Feature Type:gene_model
Chromosome:Gm15
Start:46403868
stop:46408623
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g242900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53520.1AT Chalcone-flavanone isomerase family protein JGI N/AIEA
GO:0006631GO-bp fatty acid metabolic process EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0005504GO-mf fatty acid binding EnsemblGenomesN/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
GO:0016872GO-mf intramolecular lyase activity EnsemblGenomesN/AIEA
GO:0016872GO-mf intramolecular lyase activity JGI N/AIEA
PF02431PFAM Chalcone-flavanone isomerase JGI N/AIEA
PWY-2002SoyCyc9 isoflavonoid biosynthesis I Plant Metabolic Network ISS
PWY-6325SoyCyc9 echinatin biosynthesis Plant Metabolic Network ISS
PWY-6787SoyCyc9 flavonoid biosynthesis (in equisetum) Plant Metabolic Network ISS
PWY1F-FLAVSYNSoyCyc9 flavonoid biosynthesis Plant Metabolic Network ISS
GN7V-66127SoyCyc9-rxn chalcone isomerase Plant Metabolic Network ISS

Proteins Associated with Glyma.15g242900
LocusGene SymbolProtein Name
CHI3A2 chalcone isomerase 3A2

Expression Patterns of Glyma.15g242900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g242900
ParalogEvidenceComments
Glyma.13g262500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g242900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g39050 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g242900
>Glyma.15g242900.2 sequence-type=transcript locus=Glyma.15g242900 ID=Glyma.15g242900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAGATTATGCTAATTACTAATAACACAGGCGAAGTGAGAGTATTTCAGTTCAGATTTCTCCAATCTTATTCTATAGTCTATACATATATATTAATCTATTTCAATTTTTTTATTACCAATAAGGATCATTGCTGAGCATACACAATCCTAGTCCTTAAAATGCTTGGAGCTGTAGCAGCTTCCACATCGCTATACTTTTCACCATCCACAAACTCCACCAGAATTGTTGTTCTTAAAAGAATCTCAAATTCAACACTTCCATTCAGCAATGACCACTCTTTCTCACTCTTATCAGCCACCCCTATGCATTTCTCTTCACACAAGAGCAGTAGAAGGCAACCCCATTTCCTTGCACAAGCTGCTTCATCTTCTGCTGCAAATGCCGAATACGTGGAGGAACCAGCAACAAATGTGAAATTCCAGACATCTTTGAATTTTCCTGGTTGCTCAAATTCATTAACTTTGTTTGGAACAGGATACAGGGAGAAAGTTTTTGCAATTATTGGTGTCAAGGTCTATGCTGCAGGTTTGTATCTAGATCAATCTGTCACCCAGGAATTGAATGCTTGGAAAGGGCAATCAAAAGATGCTATTCAAGGGAATTCTTCCTTGTTCGAGACCATTTTCCAATCTTCCTTTGAGAAATCATTGCAAATTGTTCTTGTCAGAGATGTTGATGGTAAAACTTTTTGGGATGCCTTAAGTGATGCCATATCACCAAGAATTCCACAACCCACAACTACAGATGAAACTGCTTTGACCACTTTCCGTGGTGTCTTTCTAGATCGCCCTCTTAAGAAAGGAGCTATCATAATTTTGACTTGGTTGAACCCCTCCAGATTGCTTGTAAGTCTACTTCCATATTTTTGTTGTGAAATTTTCTTCAGACAGATGAGATCATTGATATCTATTTCCCCTCCTTTTTACCTATGCTATCTAAAATTTTCCAACTAAATTCGTTGAGATTTCAGGTTTCTGTCTCCTCAAATGGGTTTCCATCTACTGTGGATGCTACAATCGAATCTGCAAACGTGGCTTCGGCTCTTTTTAATGTATTCCTTGGAGATAGTCCTGTTTCTCCCTCCTTGAAAGCTTCAGTGGCTGAAGGCTTGTCAAAAGTACTCAAATAAAAAAGTTTAATGTCTCTTGAGAGTTGCATACATCTATATTTTCTTGAAATGGTTCAGTCTCTAAATGTATTGCTGTAGCCTATATTCTCCTGATGTCTATGTATGCATGCTCCAAGGTCTACTGATGTATGCCTAGTGTACTATTGGAAGCTTTACCTAGTTTTAGTGTTTATTTCTAGTGATCTAAAATACTTGATTTGGAAATTAACATACACTTAGATCAAATCTGATTTCACATTGAAGGAAACACTTTATCAGTGTTAGTTCATACATGTGCTTCTCTGACCCAAGCTACATCTTCTACTTCGTCTTAGTTCTGACACATTCAACTTGGTGGATTGGAATTTAATCATGTCACCATGTATATTAAAATGTCTAGGTCCCTGTATAATTACAGAAAATTTGTTGAAGCTGATAGGCACCAGGCAGTGGCTGAGTCACTTTATATCTCAAGGCCCCCTCAATTTTTCTTTTCATTTCAAAATTCAATATTTTGCTGTACATTTTTGTAGTTTTTCATATCTTTAATTCCCCTTCCCCCTCACTTGAACACAGCATTCCCAAACTACATTTAACTTGGAGTCTAGCTTCCCCACTTCTAGTAGGATGGTTTTCCAGAAACTTCAGAGTGATGGTTTTGATGTGAACATCATGATGCAGTAATGAGTTTATCTGGTTCTGTTTGCTCAAGCAAAGTGACAACTTCAGCCATGGTTGGCCTCTTCAAGGGATCTGGTTCAAGACACATCATTGCAATGTTGAACACCTTGTTTACCTCTTTCATTGAACAATTACCTAAGCTATTATCGAGAACTAACTCCTCCTTTTTGTCTCGAACAACAGCCTTCAC
Coding sequences of Glyma.15g242900
>Glyma.15g242900.1 sequence-type=CDS polypeptide=Glyma.15g242900.1.p locus=Glyma.15g242900 ID=Glyma.15g242900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTGGAGCTGTAGCAGCTTCCACATCGCTATACTTTTCACCATCCACAAACTCCACCAGAATTGTTGTTCTTAAAAGAATCTCAAATTCAACACTTCCATTCAGCAATGACCACTCTTTCTCACTCTTATCAGCCACCCCTATGCATTTCTCTTCACACAAGAGCAGTAGAAGGCAACCCCATTTCCTTGCACAAGCTGCTTCATCTTCTGCTGCAAATGCCGAATACGTGGAGGAACCAGCAACAAATGTGAAATTCCAGACATCTTTGAATTTTCCTGGTTGCTCAAATTCATTAACTTTGTTTGGAACAGGATACAGGGAGAAAGTTTTTGCAATTATTGGTGTCAAGGTCTATGCTGCAGGTTTGTATCTAGATCAATCTGTCACCCAGGAATTGAATGCTTGGAAAGGGCAATCAAAAGATGCTATTCAAGGGAATTCTTCCTTGTTCGAGACCATTTTCCAATCTTCCTTTGAGAAATCATTGCAAATTGTTCTTGTCAGAGATGTTGATGGTAAAACTTTTTGGGATGCCTTAAGTGATGCCATATCACCAAGAATTCCACAACCCACAACTACAGATGAAACTGCTTTGACCACTTTCCGTGGTGTCTTTCTAGATCGCCCTCTTAAGAAAGGAGCTATCATAATTTTGACTTGGTTGAACCCCTCCAGATTGCTTGTTTCTGTCTCCTCAAATGGGTTTCCATCTACTGTGGATGCTACAATCGAATCTGCAAACGTGGCTTCGGCTCTTTTTAATGTATTCCTTGGAGATAGTCCTGTTTCTCCCTCCTTGAAAGCTTCAGTGGCTGAAGGCTTGTCAAAAGTACTCAAATAA

>Glyma.15g242900.2 sequence-type=CDS polypeptide=Glyma.15g242900.2.p locus=Glyma.15g242900 ID=Glyma.15g242900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTGGAGCTGTAGCAGCTTCCACATCGCTATACTTTTCACCATCCACAAACTCCACCAGAATTGTTGTTCTTAAAAGAATCTCAAATTCAACACTTCCATTCAGCAATGACCACTCTTTCTCACTCTTATCAGCCACCCCTATGCATTTCTCTTCACACAAGAGCAGTAGAAGGCAACCCCATTTCCTTGCACAAGCTGCTTCATCTTCTGCTGCAAATGCCGAATACGTGGAGGAACCAGCAACAAATGTGAAATTCCAGACATCTTTGAATTTTCCTGGTTGCTCAAATTCATTAACTTTGTTTGGAACAGGATACAGGGAGAAAGTTTTTGCAATTATTGGTGTCAAGGTCTATGCTGCAGGTTTGTATCTAGATCAATCTGTCACCCAGGAATTGAATGCTTGGAAAGGGCAATCAAAAGATGCTATTCAAGGGAATTCTTCCTTGTTCGAGACCATTTTCCAATCTTCCTTTGAGAAATCATTGCAAATTGTTCTTGTCAGAGATGTTGATGGTAAAACTTTTTGGGATGCCTTAAGTGATGCCATATCACCAAGAATTCCACAACCCACAACTACAGATGAAACTGCTTTGACCACTTTCCGTGGTGTCTTTCTAGATCGCCCTCTTAAGAAAGGAGCTATCATAATTTTGACTTGGTTGAACCCCTCCAGATTGCTTGTAAGTCTACTTCCATATTTTTGTTGTGAAATTTTCTTCAGACAGATGAGATCATTGATATCTATTTCCCCTCCTTTTTACCTATGCTATCTAAAATTTTCCAACTAA
Predicted protein sequences of Glyma.15g242900
>Glyma.15g242900.1.p sequence-type=predicted peptide transcript=Glyma.15g242900.1 locus=Glyma.15g242900 ID=Glyma.15g242900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGAVAASTSLYFSPSTNSTRIVVLKRISNSTLPFSNDHSFSLLSATPMHFSSHKSSRRQPHFLAQAASSSAANAEYVEEPATNVKFQTSLNFPGCSNSLTLFGTGYREKVFAIIGVKVYAAGLYLDQSVTQELNAWKGQSKDAIQGNSSLFETIFQSSFEKSLQIVLVRDVDGKTFWDALSDAISPRIPQPTTTDETALTTFRGVFLDRPLKKGAIIILTWLNPSRLLVSVSSNGFPSTVDATIESANVASALFNVFLGDSPVSPSLKASVAEGLSKVLK*

>Glyma.15g242900.2.p sequence-type=predicted peptide transcript=Glyma.15g242900.2 locus=Glyma.15g242900 ID=Glyma.15g242900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGAVAASTSLYFSPSTNSTRIVVLKRISNSTLPFSNDHSFSLLSATPMHFSSHKSSRRQPHFLAQAASSSAANAEYVEEPATNVKFQTSLNFPGCSNSLTLFGTGYREKVFAIIGVKVYAAGLYLDQSVTQELNAWKGQSKDAIQGNSSLFETIFQSSFEKSLQIVLVRDVDGKTFWDALSDAISPRIPQPTTTDETALTTFRGVFLDRPLKKGAIIILTWLNPSRLLVSLLPYFCCEIFFRQMRSLISISPPFYLCYLKFSN*






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