SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.15g235600

Feature Type:gene_model
Chromosome:Gm15
Start:44320970
stop:44329382
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g235600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54440.3AT glycoside hydrolase family 2 protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0005990GO-bp lactose catabolic process EnsemblGenomesN/AIEA
GO:0009341GO-cc beta-galactosidase complex EnsemblGenomesN/AIEA
GO:0009341GO-cc beta-galactosidase complex JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0004565GO-mf beta-galactosidase activity EnsemblGenomesN/AIEA
GO:0004565GO-mf beta-galactosidase activity JGI N/AIEA
GO:0030246GO-mf carbohydrate binding EnsemblGenomesN/AIEA
PTHR10066Panther BETA-GALACTOSIDASE JGI N/AIEA
PTHR10066:SF41Panther JGI N/AIEA
PF00703PFAM Glycosyl hydrolases family 2 JGI N/AIEA
PF02836PFAM Glycosyl hydrolases family 2, TIM barrel domain JGI N/AIEA
PF02929PFAM Beta galactosidase small chain JGI N/AIEA
GN7V-46962SoyCyc9-rxn β-galactosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.15g235600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g235600
ParalogEvidenceComments
Glyma.13g197000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g235600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g37670 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g235600
>Glyma.15g235600.1 sequence-type=CDS polypeptide=Glyma.15g235600.1.p locus=Glyma.15g235600 ID=Glyma.15g235600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTATTTATTACTGACTACTTTTTCAAAGCAAACCTCGCCGAAGATTTTTCTTACGCAGAGATAATGGTTGAAGTAAAAATAGATAGATTACAAGAGACATCCAAGGATAATGTTCTCACAAACTACACTATAGAAGCTACATTGTTTGATTCTGGAAGCTGGTACACCTCTGACGGGAATCCTGATCTCCTTTCATCTAATTTGGCAGACATAAAGCTCCAACCATCAAGTGCACCAACACAACCATTAGGGTTTCATGGCTATGTGCTTACAGGGGAACTGCAATCACCAAAGCTTTGGTCTGCAGAGAAACCATACCTCTATACCCTAGTTGTTGTCCTGAAAGATCGATCTGGGCGCGTTGTTGACTGTGAATCATGTCCAGTAGGATTTAGAAAAGTGTCTAAAGCCCACAAACAACTGCTTGTTAATGGACATGCAGTGGTAATCAGAGGTGTGAACAGGCATGAACATCATCCACAAGTGGGGAAGGCAAACATAGAATCCTGCATGATCAAGCATCCTACTATGGAGCCAAAGTGGGCAACTGCAATGATGGATCGTGTGATTGGCATGGTTGAGAGAGATAAAAATCACACATGCATTATCTCCTGGTCTTTAGGGAATGAATCTGGATTTGGAACAAATCATTTTGCTTTAGCTGGTTGGATTCGAGGAAGAGATTCATCGCGGGTATTGCATTATGAAGGAGGTGGATCCAGGACTCCATGCACTGATATTGTGTGTCCTATGTATATGCGTGTTTGGGACATGGTGAAAATTTCCAATGATCCAACTGAAACACGTCCTCTGATACTGTGCGAGTATTCACATGCAATGGGAAACAGTAATGGGAATCTACATATATATTGGGAAGCAATTGACAACACATTTGGACTCCAAGGAGGCTTTATTTGGGATTGGGTCGATCAGGCCTTGGTGAAAGTTTATGAAGATGGTACAAAGCATTGGGCATATGGAGGTGAATTCGGGGATGTTCCCAATGACTTGAATTTCTGTTTGAATGGCCTCACATTTCCCGATCGAACTCCTCATCCTGTTTTACACGAGGTTAAGTACTTATACCAACCAACCAAGGTGGCTTTAAAGGAAGGAAAATTGGAGATAAAAAATACTCATTTTTTTCAAACAACAGAAGGATTGGAGTTCAGCTGGTCTATTTCTGCAGATGGATACAACCTTGGATCTGGTATTTTAGGCCTCACCCATATAAAGCCCCAGAGTAGTTATGCTGTTGATTGGCAATCAGGTCCATGGTATTCTCTGTGGGCTTCAGCTGATGAAGAAGAACTATTCCTGACTATAATGGCTAAACTTTTGAACTCCACACGCTGGGTTGCAGATGGTGATATTGTTTCATCCGCTCAAGTTCAATTGACTGCCAGGAGAAACATTATTCCTCATTGGTGGCACTCTCTGGTTGCTGAAACACTAGGAGATACAATCATAGTCAAACAGCAAGATGTTTGGGATTTGACATTGAATACTAAAACAGGTTTAGTTGAAAGCTGGAAGGTTAGGGGAGTACATGTTATGAAAAAGGGCATCCTCCCATGTTTCTGGCGAGCTCCTATCGATAATGATAAAGGAGGAAATTCAGCCAGTTATTTGTCCAGGTGGAAAGCTGCTGGAATGGACTGCCTCCACTTCATTACTGAGAGCTGTTCTGTACAAAATATTACAGAGAACTCAGTTACAATATTGGTGGTTTTTGTTGGTGTTACCAAGGGAGAGGATGGTTCTATCTCTAACCAAGACAAGTCAAAGGTTTTATATACAACAGAAATGACATATACAATTTATGCTTCTGGGGATGTCATTATAGAATGCAATATGAAACCAAACCCTGATCTTCCTCCTTTGCCACGTGTGGGAATCGAATTAAATGTGGAAAAGTCTTTGGATCAAGCAACTTGGTATGGAAGAGGACCATTTGAGTGTTATCCAGATCGAAAAGCTGCAGCCCAAATTGCAGTCTACGAACATAATGTTGGTGAGTTGCACGTTCCATATATTGTTCCTGGAGAATCTTCAGGTAGGGCAGATGTTAGATGGGCAACATTCAGAAACAAAAATGGTTTTGGAATATATGCTTCTAAGTATGGTAGCTCTCCACCCATGCAAATGAGTGCAAGCTACTACAGCACCTTGGAATTTGACCGTGCCACACACAATGAAGAGCTCATTGAAGGAGATAGCATTGAGATTCATCTGGATCACAAGCACATGGGATTGGGTGGAGATGATAGTTGGTCACCATGTGTCCACAAACAGTATTTGATTCCTCCTGTGCCATACTCATTCTCTGTTAGGCTGTGTCCAGTAACTCCAGCCACTTCTGGTCATAACATCTACAAATCCCAGTTTAAAAACTCTTGA
Predicted protein sequences of Glyma.15g235600
>Glyma.15g235600.1.p sequence-type=predicted peptide transcript=Glyma.15g235600.1 locus=Glyma.15g235600 ID=Glyma.15g235600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
VFITDYFFKANLAEDFSYAEIMVEVKIDRLQETSKDNVLTNYTIEATLFDSGSWYTSDGNPDLLSSNLADIKLQPSSAPTQPLGFHGYVLTGELQSPKLWSAEKPYLYTLVVVLKDRSGRVVDCESCPVGFRKVSKAHKQLLVNGHAVVIRGVNRHEHHPQVGKANIESCMIKHPTMEPKWATAMMDRVIGMVERDKNHTCIISWSLGNESGFGTNHFALAGWIRGRDSSRVLHYEGGGSRTPCTDIVCPMYMRVWDMVKISNDPTETRPLILCEYSHAMGNSNGNLHIYWEAIDNTFGLQGGFIWDWVDQALVKVYEDGTKHWAYGGEFGDVPNDLNFCLNGLTFPDRTPHPVLHEVKYLYQPTKVALKEGKLEIKNTHFFQTTEGLEFSWSISADGYNLGSGILGLTHIKPQSSYAVDWQSGPWYSLWASADEEELFLTIMAKLLNSTRWVADGDIVSSAQVQLTARRNIIPHWWHSLVAETLGDTIIVKQQDVWDLTLNTKTGLVESWKVRGVHVMKKGILPCFWRAPIDNDKGGNSASYLSRWKAAGMDCLHFITESCSVQNITENSVTILVVFVGVTKGEDGSISNQDKSKVLYTTEMTYTIYASGDVIIECNMKPNPDLPPLPRVGIELNVEKSLDQATWYGRGPFECYPDRKAAAQIAVYEHNVGELHVPYIVPGESSGRADVRWATFRNKNGFGIYASKYGSSPPMQMSASYYSTLEFDRATHNEELIEGDSIEIHLDHKHMGLGGDDSWSPCVHKQYLIPPVPYSFSVRLCPVTPATSGHNIYKSQFKNS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo