SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G07050.1 | AT | cycloartenol synthase 1 | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0016853 | GO-mf | isomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0016866 | GO-mf | intramolecular transferase activity | EnsemblGenomes | N/A | IEA |
| KOG0497 | KOG | Oxidosqualene-lanosterol cyclase and related proteins | JGI | N/A | IEA |
| PTHR11764 | Panther | LANOSTEROL SYNTHASE | JGI | N/A | IEA |
| PTHR11764:SF3 | Panther | JGI | N/A | IEA | |
| PF00432 | PFAM | Prenyltransferase and squalene oxidase repeat | JGI | N/A | IEA |
| PWY-2541 | SoyCyc9 | plant sterol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-6115 | SoyCyc9 | avenacin biosynthesis, initial reactions | Plant Metabolic Network | ISS | |
| PWY-6663 | SoyCyc9 | plant sterol biosynthesis II | Plant Metabolic Network | ISS | |
| GN7V-47746 | SoyCyc9-rxn | cycloartenol synthase | Plant Metabolic Network | ISS |
|
Glyma.15g223600 not represented in the dataset |
Glyma.15g223600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g35330 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g223600.1 sequence-type=CDS polypeptide=Glyma.15g223600.1.p locus=Glyma.15g223600 ID=Glyma.15g223600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAAGGGGTTAAGCGAGCAAATGATGTAGTGGAGTTTGAGGAAGTTAGGGTAATTGGTTTATCAGTTATTGGAGCCCTTAATGAAATACTGACACCTGAGCATCAAAGTGAAATACGTCGCTATCTGTTCAATCACCAGAACGAAGATGGAGGGTGGGGAATGCATATAGAAGGGTCCAGCATAATGTTTACATCAGCTTTGAACTATGTGACCTTAAGATTGCTTGGAGAAGACATTAATGGTGGAGAAGGTGCTATACAAAAAGCAAGGACATGGATTCTTGATCATGGTGGAGCCACTTATATTCCTTCCTGGGGAAAACTCTGGCTTTCGGTGCTTGGCGTATATGAATGGAGCGGAATGAAGCCAATCCCACCAGAAATATGGTTGTTTCCCTATTTTGTTCCTTTATCCAGAATATGGAGTCACGCTCGGCAAGTGTATCTACCCATGTCTTATTTATATGGTAAAAGATTCATAGGTCCTATAAATGCACTTGTTTTATCCCTTAGAAGAGAGCTCTACACCCTTCCTTATAATCTCCTCGACTGGAATCAAGCTAAAAATTCATGTGCCAAGGAAGATATGTCTCATCCAAGCTCAATGATTCAAAATATTTTATGGGATTCTTTTCACAGTATAGGAGAACCTCTTCTCATGCACTGGCCTTTCTCTAAGCTAAGACAAAAAGCTCTTTGTCATGTAATGGAACATATACACTACGAGGATGAAAATACAAACTACATTTGTCTTGCTCCCATTAGCAAGGTATTAAACATGGTTTGTTGTTGGTTGGAGAATCCCAATTCCCAAACATTTAAGCGTCACATTCCAAGAATCAAAGACTATCTCTGGGTGGCTGAGGATGGAATGAAAATGCAGGCATATGGTGGTTCTCAATTATGGGACACGGTTTTTTCTATTCAAGCAATCTTAGCTACTAATCTTAAGGATGAATATGGTTCCATGCTTAAGAAAGCAAATAATTTCATAAAATGCTCACAGATTACAACAAACAGTTCTGGTACTCCAAGTGACTGGTATCGCCACATTTCTAAAGGTGGTTGGACTTTCAACTGCAGACAATGGTTGGCCAGTGCCGCCATTTTGTTATCAAACATGTCATTTGATATTGTTGATAGAGCAATGGAAGTAGAACAACTATATGATGGTGTTAATTGGATTTTATCCATGCAGAATAAAAATGGCGGATTCGCAGGCTTTGAACTTACAAGATCTTATGCATGGCTAGAGAAATTAAATCCAACTGAAACATTTGAAGATGTGATGATCGATCGCCAGTTCGTAGAATGTACTACATCAGCAATTGGAGGTCTTGCCTTATTCACACAACGATATCCGGGGCACAGAAAGAAAGAAATAGAAATTTGTATTGCTAAGGCGGCAAACTATATTGAAAGCATGCAGTTAGCTGATGGCTCATGGTACGGGTCATGGGGAGTCTGCTATACTTATGGAACATGGTTTGGAATAAAGGGACTCATCGTTGCCGGTAAGAGTTATCAAGATAGTCAAAGCATTAGAAGAGGATGTGAATTTTTGCTTTCCAAACAACAACTTTGTGGTGGTTGGGGAGAGAGCTACATCACATGCCAAACGATGGTATACACAAATTTGGAAGGAAACAAGTCTAATGTAGTGAACACTGCATGGGCTATGTTGGCACTTATTGAAGCAGGGCAGGCAGAAAGAGATCCAGCCCCATTGCATCATGCGGCCAAGGTTTTAATCGATTCACAACTAGAAAACGGAGAGTTTCCTCAACAGGCTCCCTCTGCATACAGAAACATCTTTCCCATATGGGCCCTTGGAGAATATCGTAGTCGTGTACTACTTTGTCCTAGCAAGTAA
>Glyma.15g223600.1.p sequence-type=predicted peptide transcript=Glyma.15g223600.1 locus=Glyma.15g223600 ID=Glyma.15g223600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKGVKRANDVVEFEEVRVIGLSVIGALNEILTPEHQSEIRRYLFNHQNEDGGWGMHIEGSSIMFTSALNYVTLRLLGEDINGGEGAIQKARTWILDHGGATYIPSWGKLWLSVLGVYEWSGMKPIPPEIWLFPYFVPLSRIWSHARQVYLPMSYLYGKRFIGPINALVLSLRRELYTLPYNLLDWNQAKNSCAKEDMSHPSSMIQNILWDSFHSIGEPLLMHWPFSKLRQKALCHVMEHIHYEDENTNYICLAPISKVLNMVCCWLENPNSQTFKRHIPRIKDYLWVAEDGMKMQAYGGSQLWDTVFSIQAILATNLKDEYGSMLKKANNFIKCSQITTNSSGTPSDWYRHISKGGWTFNCRQWLASAAILLSNMSFDIVDRAMEVEQLYDGVNWILSMQNKNGGFAGFELTRSYAWLEKLNPTETFEDVMIDRQFVECTTSAIGGLALFTQRYPGHRKKEIEICIAKAANYIESMQLADGSWYGSWGVCYTYGTWFGIKGLIVAGKSYQDSQSIRRGCEFLLSKQQLCGGWGESYITCQTMVYTNLEGNKSNVVNTAWAMLALIEAGQAERDPAPLHHAAKVLIDSQLENGEFPQQAPSAYRNIFPIWALGEYRSRVLLCPSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
