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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G47300.2 | AT | ribonuclease Ps | JGI | N/A | IEA |
| GO:0001682 | GO-bp | tRNA 5'-leader removal | EnsemblGenomes | N/A | IEA |
| GO:0001682 | GO-bp | tRNA 5'-leader removal | JGI | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | EnsemblGenomes | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | JGI | N/A | IEA |
| GO:0008033 | GO-bp | tRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0090502 | GO-bp | RNA phosphodiester bond hydrolysis, endonucleolytic | EnsemblGenomes | N/A | IEA |
| GO:0000172 | GO-cc | ribonuclease MRP complex | EnsemblGenomes | N/A | IEA |
| GO:0005655 | GO-cc | nucleolar ribonuclease P complex | EnsemblGenomes | N/A | IEA |
| GO:0000171 | GO-mf | ribonuclease MRP activity | EnsemblGenomes | N/A | IEA |
| GO:0004526 | GO-mf | ribonuclease P activity | EnsemblGenomes | N/A | IEA |
| GO:0004526 | GO-mf | ribonuclease P activity | JGI | N/A | IEA |
| PF06978 | PFAM | Ribonucleases P/MRP protein subunit POP1 | JGI | N/A | IEA |
| PF08170 | PFAM | POPLD (NUC188) domain | JGI | N/A | IEA |
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Glyma.15g216400 not represented in the dataset |
Glyma.15g216400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g29980 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g216400.1 sequence-type=CDS polypeptide=Glyma.15g216400.1.p locus=Glyma.15g216400 ID=Glyma.15g216400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTTACTGATGGAACCAAAAAGCCTCAAGTTTCAGTACCTACACCACCACCACCACCTCGAAAAATCAATGTGCAGAAATATGCTGAATCCCGTGCTCTTGAACTCCAGAGTCTTCAATCTATCATAGAAAATAGAGTAAACAGTGATTATAGGTCTCAAAGGAACAAGAGAAGAAGGACAACTGCGTTTGATAACCAAATTGCAAGAAAAGGGTGCAGAAGAAAGAGGCAGAAACTGGGAATAATTGATAAAGCCCTTGCCGAATCAGGTTTGGAGGAGAATCACCTAAAGAAGCTTCCTCGGTGTGTTCGTCGGAGATATGAACTAAAGAAAAACCCAGAGAATGGTTTTTGCACTTCTGGGGATGGAACCAAGAGGCTGAGAACTCATGTGTGGCATGCAAAGCGGTTTGCTATGACCAAGCTTTGGGGTTACCACCTTCCTTTGTGTCTTCAAGGAAGGGGTAAAGGTTCGAGGGCGCTCTTGAAAAGGCTCAAACAAGGGGTGCTTGTACATGATGCAAGCTATTATACTGCCGTCCAATTGGAGGGTCCAGAGGATTCATTAATGTCAGTATTAAGAATGGTGCTGGAACCCTATCCAGCAACAACACCACATCCTGGAAATCATGATGACTCTGTTCTTTACAGTGTAACCTATGGAAAAGCAATGCTGCATCAATGTGGAGCACCGGTTTCTCAGCCAATTGCTCCTGTAACCTACATGTGGCAACCAAGTTCCCAACAAAATATGAGTACAGAGCTAGATGGAAGAAATCATTGTACTTCTTTTGGACAACATGACATTGGTAATGATTCAAACAAACATGGTGTGGAGTTAAGTGAAAAATCAGGCAAAATGAAGCACGGTTCTTCATTTAGATGCCTATGGGTGTGGATACATGCTTCTGCCTTTGAAGAAGGATACGATAATCTAAAAATTGCCTGCCAGAAAGAGATGGAGAAGGGGGGCATCTCAATTAATTGCTTTTCCCTTGAGGGTCAACTTGCAAAATTAGAATTAATTGGATTAGGGACATTTCAACTTCTTCAAAAAGTATTGCATGGTGTTGGAAGTATTTCAGAGAATTATTGGCAATTGAAGAAACATGTGCCTATCGAAGAAGAGTCTGTTTCTCAGATCAGAAATTCATCCATACTGAGAAATGAGGATTATTTTTCTTCATGTGCTATGCTATCTCTTAATGTCAAGGATCCTCGAGAATTGCCATGGAAGAAGACTGTTGTTCCAGTGGAGTCCATTTCAACTAAGACTCCGAGTGATGCCCAAGAAAAGAAATACAAAGAGCTTGCTGAGTTGGGAGGAATATTGGAAGAGAATAGAGATTTATCTTCATTATCAAGGTCTAAACTTGTAGACAGCCAGTTTGATATTGACGATCTATGGTATGCTACCACCAGAGGGTTGAGGCCTCCAGTGGAAGACAGTGTCCTTTCCAAGGAGAAACACCATGAACGTATGGTTAATTTCTGCCTTGATGATATAGATTCTGGAGAGGCCAACTCTTCAACTAAGGTGCAGTGCTCGAGATCTTGCCCTATTCTTCTTTTAAAAAATGATATGAAGGAATTGATTATAGGATGGTCTGTTATACTTCCCTTAAGTTGGGTCAAAGCCTTCTGGATTCCGCTCATCTCTAATGGGGCACATGCAATAGGTTTGCAAGAGAAGCACTGGATTTCATGTGAAATGGGGCTACCATTTTTCCCTTCAGATTCCCCAGATTGTAAGGCATACTCTTGCTTAATGGAAGCTAAAGCTGCTGCATTTAATAAAAAAGAAGAACTCCGTCCTCCTGTGATAAGGCATTTAAGAGTTCCCATACTGCCTCCATGGGGTATTGTTCGCATTACTTTTGACAAAGTGATTAATGCAATGGAGACTCATGATCTATCAACTAGGGAAGATTTGACCAATGCTAATTCATTACCAAACCCTTGCCATGGAAACTTTGAAATTTTTAATTCTGACTCCGGGAGTAATTCGTTTGATGGAACTGTAGTGAGGACAGGTTGTATGCTGACTACTTTCCTCAATGAAACCAAAACTGGTCAATTGTTATTGTTTCCTTATGCAGCAGATGGAAAGGCTAGAATCTCTAAGTTTATTAATGGTGAACTAAAGCTTGATCCAAGGCATAGAAGCTCTGACATTTATGACCATAAGCTATGTTTTGTAAGAGTTCATCTTCGTCCCTTCAAGGAAGGATGTTTTGAAGAGGGTGCAGTTATTTGTGCACCATATCCTTCTGACATATCTTTATGGACTTCAAGTTGTGAGAAAAGAGAAGAGGGACTTCAAATGTCTCAATCTGCTATGCGATTATACTTCAAAGAACATTCCTCTGGTAAATGGGGAATGCAGATACCAGATGATTCAATTGCTAGCAAGTCTCAGCGGTGGCCTATTGGCTTTGTCACAACAGCTTCTGTTCAAGGAAGCAAGAGTCTAGTAGCAGAGGGCTTTTGTGAGGCTGTTTTACTATCTCATTTGAGAGAGGAACAGTGGAAGGAGATGCCTATGAAGAAGAGGAGGGAAATATACGTACTTGTTAGGAATTTAGGATCTACAGCATATAGACTTGCTCTTGCCTCTATTGTTCTTGAAAATCAAGAAAATGACATTGATTTCTTGTAA
>Glyma.15g216400.1.p sequence-type=predicted peptide transcript=Glyma.15g216400.1 locus=Glyma.15g216400 ID=Glyma.15g216400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVTDGTKKPQVSVPTPPPPPRKINVQKYAESRALELQSLQSIIENRVNSDYRSQRNKRRRTTAFDNQIARKGCRRKRQKLGIIDKALAESGLEENHLKKLPRCVRRRYELKKNPENGFCTSGDGTKRLRTHVWHAKRFAMTKLWGYHLPLCLQGRGKGSRALLKRLKQGVLVHDASYYTAVQLEGPEDSLMSVLRMVLEPYPATTPHPGNHDDSVLYSVTYGKAMLHQCGAPVSQPIAPVTYMWQPSSQQNMSTELDGRNHCTSFGQHDIGNDSNKHGVELSEKSGKMKHGSSFRCLWVWIHASAFEEGYDNLKIACQKEMEKGGISINCFSLEGQLAKLELIGLGTFQLLQKVLHGVGSISENYWQLKKHVPIEEESVSQIRNSSILRNEDYFSSCAMLSLNVKDPRELPWKKTVVPVESISTKTPSDAQEKKYKELAELGGILEENRDLSSLSRSKLVDSQFDIDDLWYATTRGLRPPVEDSVLSKEKHHERMVNFCLDDIDSGEANSSTKVQCSRSCPILLLKNDMKELIIGWSVILPLSWVKAFWIPLISNGAHAIGLQEKHWISCEMGLPFFPSDSPDCKAYSCLMEAKAAAFNKKEELRPPVIRHLRVPILPPWGIVRITFDKVINAMETHDLSTREDLTNANSLPNPCHGNFEIFNSDSGSNSFDGTVVRTGCMLTTFLNETKTGQLLLFPYAADGKARISKFINGELKLDPRHRSSDIYDHKLCFVRVHLRPFKEGCFEEGAVICAPYPSDISLWTSSCEKREEGLQMSQSAMRLYFKEHSSGKWGMQIPDDSIASKSQRWPIGFVTTASVQGSKSLVAEGFCEAVLLSHLREEQWKEMPMKKRREIYVLVRNLGSTAYRLALASIVLENQENDIDFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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