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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G16780.1 | AT | SART-1 family | JGI | N/A | IEA |
| GO:0000387 | GO-bp | spliceosomal snRNP assembly | EnsemblGenomes | N/A | IEA |
| GO:0000398 | GO-bp | mRNA splicing, via spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0000481 | GO-bp | maturation of 5S rRNA | EnsemblGenomes | N/A | IEA |
| GO:0045292 | GO-bp | mRNA cis splicing, via spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0046540 | GO-cc | U4/U6 x U5 tri-snRNP complex | EnsemblGenomes | N/A | IEA |
| PTHR14152 | Panther | SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES | JGI | N/A | IEA |
| PTHR14152:SF5 | Panther | U4/U6.U5 TRI-SNRNP-ASSOCIATED PROTEIN 1 | JGI | N/A | IEA |
| PF03343 | PFAM | SART-1 family | JGI | N/A | IEA |
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Glyma.15g216300 not represented in the dataset |
Glyma.15g216300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g229600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g29952 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g216300.1 sequence-type=CDS polypeptide=Glyma.15g216300.1.p locus=Glyma.15g216300 ID=Glyma.15g216300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTATAAATATAACTTGGCGGGGGTGAAAGTTCTTCATGGCCTCGATAAAGTTATGGAAGGTGGAACAGTAGTTCTAACTATTAAAGATCAGCCCATACTTGCCAATGGTGATGTTAATGAAGATGTTGACATGCTTGAGAACATTGAAATTGGAGAACAGAAACGACGAGATGAAGCTTATAAAGCTGCAAAAAAAAAAAAAACTGGCATATATGATGATAAGTTCAATGATGACCTCTCCACGGAGAAGAAAATGCTTCCCCAGTATGATGATCCAGTTGCAGAAGAGGGTTTAACTTTGGATGAAAAGGGACGATTCTCAGGTGAAGCTGAGAAGAAAATTGAAGAGCTGCGAAGAAGGTTAACGGGTGTGTCCACGAATACCTTTGAAGATCTAACTGCATCTGGAAAGGTATCATCAGATTACTATACTCATGAAGAAATGCTAAAATTTAAGAAACCCAAGAAGAAAAAATCTTTGCGGAAGAAATATAAGCTGGACATCAATGCCCTTGAAGTTGAAACTGTCTCTTCAGGATTGAGTGTCAGTGACCTTGGTTCTCGGAAAGATGTAAGGAGACAAGCCATCAAAGATGAGCAAGAAAGATTGGAGGCTGAGATGAGAAGTAATGCTTACCAGTCTGCTTATGCTAAAGCAGACGAAGCCTCCAAATTGCTGCGTCTGGAACAAACTCTCAATGTTAAAACAGAGGAAGATGAAACTCCAGTTTTTGTAGATGATGATGAGGATCTTCGTAAGTCCTTAGAGAAAGCAAGAAGATTAGCTCTTAAAAAGGAGGGAGAAGGGGCATCTTGTCCTCAAGCTATTGCATTGCTTGCCACCTCAAATCATAATAATGAGACTGATGATCAAAACCCTACAGCTGGAGAGTCACGAGAAAACAAGGTGGTCTTCACAGAGATGGAAGAATTTGTCTGGAGTCTCCACATTGATGAAGAAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGGCTAATGTTCCTGATGAAGAAAAGAGTAATGAAGCTGGTGGATGGACTGGAGTTCAAGAAACTAATGAAGATGAACAACGCAATACAGAAAACAAAGAGGAAATTAAATAG
>Glyma.15g216300.1.p sequence-type=predicted peptide transcript=Glyma.15g216300.1 locus=Glyma.15g216300 ID=Glyma.15g216300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MYKYNLAGVKVLHGLDKVMEGGTVVLTIKDQPILANGDVNEDVDMLENIEIGEQKRRDEAYKAAKKKKTGIYDDKFNDDLSTEKKMLPQYDDPVAEEGLTLDEKGRFSGEAEKKIEELRRRLTGVSTNTFEDLTASGKVSSDYYTHEEMLKFKKPKKKKSLRKKYKLDINALEVETVSSGLSVSDLGSRKDVRRQAIKDEQERLEAEMRSNAYQSAYAKADEASKLLRLEQTLNVKTEEDETPVFVDDDEDLRKSLEKARRLALKKEGEGASCPQAIALLATSNHNNETDDQNPTAGESRENKVVFTEMEEFVWSLHIDEEARKPESEDVFMHDDEEANVPDEEKSNEAGGWTGVQETNEDEQRNTENKEEIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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