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Report for Sequence Feature Glyma.15g215900

Feature Type:gene_model
Chromosome:Gm15
Start:35359923
stop:35369132
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g215900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04900.1AT NYC1-like JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0010304GO-bp PSII associated light-harvesting complex II catabolic process EnsemblGenomesN/AIEA
GO:0015996GO-bp chlorophyll catabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0034256GO-mf chlorophyll(ide) b reductase activity EnsemblGenomesN/AIEA
KOG0725 KOG Reductases with broad range of substrate specificities JGI N/AIEA
PTHR24314Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24314:SF37Panther JGI N/AIEA
PF00106PFAM short chain dehydrogenase JGI N/AIEA
PWY-5068SoyCyc9 chlorophyll cycle Plant Metabolic Network ISS
GN7V-45673SoyCyc9-rxn chlorophyllide-a monooxygenase Plant Metabolic Network ISS

Expression Patterns of Glyma.15g215900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g215900 not represented in the dataset
Glyma.15g215900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.15g215900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g29900 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g215900
>Glyma.15g215900.2 sequence-type=transcript locus=Glyma.15g215900 ID=Glyma.15g215900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGTGCCACGTGGCCAAGTGCGTGGAGCAAACCACCACACAAATCGTTAAACACAACCCCCGAGAGCAACTATCCCTTCTTCCTTTCTCTCTTCTATTCTCATTCGCATTTCGCACCAAGTCAATGGCTTCCACCACCACTCTCTCCTTCCACTTCCCATATCCAACAACATCAACGCTCTCTTCTCACTCTCAACTTTCGCCCTCTCCGCAACCTTCCCAATTCAAACCCTGCACCGTTGCTTCCCGCCAAAACCTCTGCACCTCCAACACCCTCTCTGTCTCTGCTTCCAGAAAAAACTCAACCTCTCCAATTTTTCTCGCTACGGCTTCTGGCAAATCTGAGCCTATGCTCCCTCCTTTCAACGTTTTGATTACTGGCTCAACCAAAGGAATAGGGTATGCGTTGGCGAAAGAGTTTTTAAAAGCTGGTGACAACGTCCTGATTTGCTCAAGATCAGATGAAAGGGTAAAGACTGCTGTCCAGAACTTGAGAGTAGAATTTGGGGAGCAGCATGTGTGGGGAACTAAATGTGATGTAAAAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAAAAAATGAAATACATTGATATATGGATAAACAATGCTGGATCAAATGCATATAGCTATAAGCCACTTGTTGAGGCTTCAGATGAAGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATCAAGATGATGGTGAACCAACCTCGTGGAGGTCATATTTTCAATATAGACGGGGCAGGTTCAGATGGAAGACCAACTCCTAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTGGTGCATTTAACAAAGTCATTACAGGCAGAATTGCGGATGCAAGATGTTAAAAACGTTGTGGTGCATAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTCATGTCTGGTGTTAATACAAAGCAGGCAAAGTTTTTCATTAATGTCTTGGCAGAACCAGCTGAAGTGAGATTGGCATTCGGCGCAAGAAGGAATCGATACATTCTTGAAGATTGAACTGCATAAATATTTGTGCTATGTGCAACTTTTATTTCTTGTTTTAAATATCTATTCATCCCCCCACTCCATTTTTTAAAAACTTTTGTAGCATTCTTTACCTCAAAGTGAAACTTAAATTTACATGTTTGACGGTAGGATATAGGTTACAAAATAACTTTGGTTAGCTGCAAAAGAAAAAAAAAACTTGGTTAGAGCTACCATTAGGCAATGAGTAAGTATTAAATGAA
Coding sequences of Glyma.15g215900
>Glyma.15g215900.1 sequence-type=CDS polypeptide=Glyma.15g215900.1.p locus=Glyma.15g215900 ID=Glyma.15g215900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCACCACCACTCTCTCCTTCCACTTCCCATATCCAACAACATCAACGCTCTCTTCTCACTCTCAACTTTCGCCCTCTCCGCAACCTTCCCAATTCAAACCCTGCACCGTTGCTTCCCGCCAAAACCTCTGCACCTCCAACACCCTCTCTGTCTCTGCTTCCAGAAAAAACTCAACCTCTCCAATTTTTCTCGCTACGGCTTCTGGCAAATCTGAGCCTATGCTCCCTCCTTTCAACGTTTTGATTACTGGCTCAACCAAAGGAATAGGGTATGCGTTGGCGAAAGAGTTTTTAAAAGCTGGTGACAACGTCCTGATTTGCTCAAGATCAGATGAAAGGGTAAAGACTGCTGTCCAGAACTTGAGAGTAGAATTTGGGGAGCAGCATGTGTGGGGAACTAAATGTGATGTAAAAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAAAAAATGAAATACATTGATATATGGATAAACAATGCTGGATCAAATGCATATAGCTATAAGCCACTTGTTGAGGCTTCAGATGAAGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATCAAGATGATGGTGAACCAACCTCGTGGAGGTCATATTTTCAATATAGACGGGGCAGGTTCAGATGGAAGACCAACTCCTAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTGGTGCATTTAACAAAGTCATTACAGGCAGAATTGCGGATGCAAGATGTTAAAAACGTTGTGGTGCATAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTCATGTCTGGTGTTAATACAAAGCAGGCAAAGTTTTTCATTAATGTCTTGGCAGAACCAGCTGAAGTGGTTGCAGAATACTTAGTTCCAAACATTAGATCTGTCCCTGCAAATGGATCAATGAAACCAACATACATTCGATTCCTCACGGGTTTGAAAGCCTATTCCCAGATATTTTCAAGATTGGCATTCGGCGCAAGAAGGAATCGATACATTCTTGAAGATTGA

>Glyma.15g215900.2 sequence-type=CDS polypeptide=Glyma.15g215900.2.p locus=Glyma.15g215900 ID=Glyma.15g215900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCACCACCACTCTCTCCTTCCACTTCCCATATCCAACAACATCAACGCTCTCTTCTCACTCTCAACTTTCGCCCTCTCCGCAACCTTCCCAATTCAAACCCTGCACCGTTGCTTCCCGCCAAAACCTCTGCACCTCCAACACCCTCTCTGTCTCTGCTTCCAGAAAAAACTCAACCTCTCCAATTTTTCTCGCTACGGCTTCTGGCAAATCTGAGCCTATGCTCCCTCCTTTCAACGTTTTGATTACTGGCTCAACCAAAGGAATAGGGTATGCGTTGGCGAAAGAGTTTTTAAAAGCTGGTGACAACGTCCTGATTTGCTCAAGATCAGATGAAAGGGTAAAGACTGCTGTCCAGAACTTGAGAGTAGAATTTGGGGAGCAGCATGTGTGGGGAACTAAATGTGATGTAAAAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCAAGAAAAAATGAAATACATTGATATATGGATAAACAATGCTGGATCAAATGCATATAGCTATAAGCCACTTGTTGAGGCTTCAGATGAAGATCTTATTGAGGTGGTTACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATCAAGATGATGGTGAACCAACCTCGTGGAGGTCATATTTTCAATATAGACGGGGCAGGTTCAGATGGAAGACCAACTCCTAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTGGTGCATTTAACAAAGTCATTACAGGCAGAATTGCGGATGCAAGATGTTAAAAACGTTGTGGTGCATAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTCATGTCTGGTGTTAATACAAAGCAGGCAAAGTTTTTCATTAATGTCTTGGCAGAACCAGCTGAAGTGAGATTGGCATTCGGCGCAAGAAGGAATCGATACATTCTTGAAGATTGA
Predicted protein sequences of Glyma.15g215900
>Glyma.15g215900.1.p sequence-type=predicted peptide transcript=Glyma.15g215900.1 locus=Glyma.15g215900 ID=Glyma.15g215900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASTTTLSFHFPYPTTSTLSSHSQLSPSPQPSQFKPCTVASRQNLCTSNTLSVSASRKNSTSPIFLATASGKSEPMLPPFNVLITGSTKGIGYALAKEFLKAGDNVLICSRSDERVKTAVQNLRVEFGEQHVWGTKCDVKNAEDVKNLVSFAQEKMKYIDIWINNAGSNAYSYKPLVEASDEDLIEVVTTNTLGLMICCREAIKMMVNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQDVKNVVVHNLSPGMVTTDLLMSGVNTKQAKFFINVLAEPAEVVAEYLVPNIRSVPANGSMKPTYIRFLTGLKAYSQIFSRLAFGARRNRYILED*

>Glyma.15g215900.2.p sequence-type=predicted peptide transcript=Glyma.15g215900.2 locus=Glyma.15g215900 ID=Glyma.15g215900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASTTTLSFHFPYPTTSTLSSHSQLSPSPQPSQFKPCTVASRQNLCTSNTLSVSASRKNSTSPIFLATASGKSEPMLPPFNVLITGSTKGIGYALAKEFLKAGDNVLICSRSDERVKTAVQNLRVEFGEQHVWGTKCDVKNAEDVKNLVSFAQEKMKYIDIWINNAGSNAYSYKPLVEASDEDLIEVVTTNTLGLMICCREAIKMMVNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELRMQDVKNVVVHNLSPGMVTTDLLMSGVNTKQAKFFINVLAEPAEVRLAFGARRNRYILED*






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