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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53720.1 | AT | cyclophilin 59 | JGI | N/A | IEA |
| GO:0000413 | GO-bp | protein peptidyl-prolyl isomerization | EnsemblGenomes | N/A | IEA |
| GO:0006457 | GO-bp | protein folding | JGI | N/A | IEA |
| GO:1901407 | GO-bp | regulation of phosphorylation of RNA polymerase II C-terminal domain | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | JGI | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003755 | GO-mf | peptidyl-prolyl cis-trans isomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0003755 | GO-mf | peptidyl-prolyl cis-trans isomerase activity | JGI | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| GO:0016853 | GO-mf | isomerase activity | EnsemblGenomes | N/A | IEA |
| KOG0415 | KOG | Predicted peptidyl prolyl cis-trans isomerase | JGI | N/A | IEA |
| PTHR11071 | Panther | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | JGI | N/A | IEA |
| PTHR11071:SF25 | Panther | JGI | N/A | IEA | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | N/A | IEA |
| PF00098 | PFAM | Zinc knuckle | JGI | N/A | IEA |
| PF00160 | PFAM | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| CYP56 | peptidyl-prolyl cis-trans isomerase CYP56 |
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Glyma.15g213200 not represented in the dataset |
Glyma.15g213200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g28380 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g213200.1 sequence-type=CDS polypeptide=Glyma.15g213200.1.p locus=Glyma.15g213200 ID=Glyma.15g213200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGGTGCTGATCGTGACAAGCTTAGGGGACCTTGTCGTTGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAACGGGTGTCTATTTCACACTGTTCAAAAGGATTTTACTGCCCAAACTGGCGATCCAACTGGCACGGGAACTGGTGGTGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAGTGATGAAATTCATATTGATCTGAAGCATTCCAAGACTGGAACAGTTTCCATGGCAAGTGCTGGAGAGAATCTGAATGCATCACAGTTTTATATCACTCTGCGTGATGACCTTGATTACCTTGATGGAAAGCACACAGTTTTTGGTGAGCTAGCTGAAGGATTCGAGACTTTAACTAGAATAAATGAGGCTTATGTGGATGAGAAAGGAAGACCCTATAAAAATATAAGAATCAAGCACACATACATCCTGGAGGATCCTTACGATGATCCTTCTCAGCTATCTGATTTCATTCCTGATGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTGCGACTTGAAGATGATTGGGTTCCCATGGATGAACAATTAAATCCGGCAGAACTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGAGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTATTGTTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCAATGGCTGAAATCATCCGTGATCAAAAGACCGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACGGTCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACACGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCACAATACAGGCGGAAAGATCAAAAGGGTAAAGGTGGTGGTTGCTTCAAATGTGGTTCTACAGATCATATTGCTAAGGATTGTACGGGAGAGGCTACAATGAAACAACCACAAGCAAAATACATCTTAAAGGATGATAATGTCCAACGTGGTGGAGATAGTGCGAGATATGAAATGGTGTTTGATGAAGATAATTCACAACATCCAAGGCAAGATGTAAAACACCAAAGGCATGACAGGGATGACCCAGTCGAAAGAAAAGATCATAGAAGCCGCAGAGATCAGGATATGATAGACTCAAACAACAGAGATAGGTATGGTGATAGAAGCAGAGGGCATGGGGGAAATGGTGAGAACAAAGCACGGTCTGAAAGAGGTGTAATAGATTTGGATTCCAATGCTGATAAGAAAGACAGAGATAGGCACATGGGAAGACATGGAGATGATGATTACAAGCGGAAGGATGAGCATGATTCCAGAAAAAGAGACGAAGATTATGTCTACAAGTGGAAAGACAAGCGAGACTCAAGAAAAAGAGATGAAGATGATGAGTATAGAGAAATACAAACTAGTCGATATGATAGGAGAAACACAGATTCTAGCCATTTGGAGAGAAGGAATAGCAGAGATTATAGGAAGAAACCTGAAGACAGTGGAACGCAAGATATGAAGATTGACTCCGGACAAAGAAAAGGAAGTCCAGGTGATGAGGATTACAAAAATGGAAGGGATCATGAGGATTACGAACGTAAAATGAAGGATGAGGATTACAGAAATAGAAAGGAAGAACGTGTGCATAAAAGCCAAGATATTGAAGCGGATGATGGCTACAAACGTAGAAGGGAGGATGCAGATTACAAACGCAGAAGGGATGATGGAGATTACAGACATAGAAGGGAAGAGCGTGGACACGACAGGAGATGA
>Glyma.15g213200.1.p sequence-type=predicted peptide transcript=Glyma.15g213200.1 locus=Glyma.15g213200 ID=Glyma.15g213200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVSMASAGENLNASQFYITLRDDLDYLDGKHTVFGELAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYDDPSQLSDFIPDASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSMAEIIRDQKTGDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGEATMKQPQAKYILKDDNVQRGGDSARYEMVFDEDNSQHPRQDVKHQRHDRDDPVERKDHRSRRDQDMIDSNNRDRYGDRSRGHGGNGENKARSERGVIDLDSNADKKDRDRHMGRHGDDDYKRKDEHDSRKRDEDYVYKWKDKRDSRKRDEDDEYREIQTSRYDRRNTDSSHLERRNSRDYRKKPEDSGTQDMKIDSGQRKGSPGDEDYKNGRDHEDYERKMKDEDYRNRKEERVHKSQDIEADDGYKRRREDADYKRRRDDGDYRHRREERGHDRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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