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Report for Sequence Feature Glyma.15g202800

Feature Type:gene_model
Chromosome:Gm15
Start:25690765
stop:25691694
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g202800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31985.1AT Ribosomal protein L39 family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG0002 KOG 60s ribosomal protein L39 JGI N/AIEA
PTHR19970Panther RIBOSOMAL PROTEIN L39E JGI N/AIEA
PF00832PFAM Ribosomal L39 protein JGI N/AIEA

Expression Patterns of Glyma.15g202800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g202800 not represented in the dataset
Glyma.15g202800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.15g202800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g24650 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g202800
>Glyma.15g202800.1 sequence-type=CDS polypeptide=Glyma.15g202800.1.p locus=Glyma.15g202800 ID=Glyma.15g202800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTTCCCACAAGACCTTCAGGATCAAGAAGAAACTCGCCAAGAAGATGAGGCAGAACAGGCCCATCCCTTACTGGATCCGCATGAGAACCGACAATACCATCAGGTACAATGCTAAGCGCAGGCACTGGCGCCGCACCAAGCTTGGATTTTAA
Predicted protein sequences of Glyma.15g202800
>Glyma.15g202800.1.p sequence-type=predicted peptide transcript=Glyma.15g202800.1 locus=Glyma.15g202800 ID=Glyma.15g202800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*






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