Glyma.15g201800

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Report for Sequence Feature Glyma.15g201800

Feature Type:	gene_model
Chromosome:	Gm15
Start:	24825668
stop:	24827432
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g201800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15580.1	AT	RING/U-box superfamily protein	JGI	N/A	IEA
GO:0016567	GO-bp	protein ubiquitination	EnsemblGenomes	N/A	IEA
GO:0043161	GO-bp	proteasome-mediated ubiquitin-dependent protein catabolic process	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
GO:0061630	GO-mf	ubiquitin protein ligase activity	EnsemblGenomes	N/A	IEA
KOG1493	KOG	Anaphase-promoting complex (APC), subunit 11	JGI	N/A	IEA
PTHR14155	Panther	RING FINGER DOMAIN-CONTAINING	JGI	N/A	IEA
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI	N/A	IEA

Expression Patterns of Glyma.15g201800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g201800 not represented in the dataset	Glyma.15g201800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.15g201800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g24100	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g201800

Limit To All Plant Sequences

>Glyma.15g201800.2 sequence-type=transcript locus=Glyma.15g201800 ID=Glyma.15g201800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTATGTAGCAAGAAAATCTATCAAAACTGATGGCCTAATTTTGTCCTTCCACTTTTCCCATAAAGTAATGGCATTATGGCAATAGCTGTGGGATACCAATTCCTCCTTTCTGGCTTTGACAAAAAACAAACACATTCTGCTATCCAAATCGATCCACCTTTCCACTCATCATTACCATGATATTAAAGAACAAGTCCATGGCATAAGAAGCAAAGGGTAATGTATTCATGTTCATAGTTTGTGAACTTTTGGTACATGACCAAAACACAATGGCTGGAATGCTTCCTGGAGTTGAATGTGCTAGAAGGAGAAGGTTACATCGATGTTTGGATTCAAATTCAACTTCTTTAACTTCACATGCATCCACAAGGCGTTCTTCTTTCTGTTTCAAAGAAGCATGTTATACCAGCCACACCCTGATGAGAATATGGGAGGAGTGGTCAGAGAAGCCAAACAGAGATTGGATGACAAGTTCAGAGCTCATAGGAATTCAGAAAACAAAAGGCAAAACAGCACAAAATGTGTGGAGGGCAGAAGAACACGCATAGCAGAGTTTCACACAGAGGTATATGGGTCGAAGAAAAGTGGTTCAAGGAGGTTCAGTTGGACCAAATGGAGCTGGAAGGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAATCATTCAGAGTTGGAGAGACACTGATCCATCTTCCTTGTGCCCATAGGTTCCATGACAGATGCTTAAAACCATGGTTGGAAAATAATTCTCATTGTCCATGCTGTAGAACCACCATTTTTTCCCTCTAGATTTTACTTTTCCTTGTCCGCAATTGAAGACTTGGTTGGATGAATGATGAAATCAAGAATTTTGACCATGACTTGCAGTTTCTTAAAAGGTTGGTTGGATGGTGAAGGTTAAAGGAAAGGAGGAGAAGGTTCTGCATTCGATTCCTCCTATTAACAAAAACAAATATTTTAACAATTAATATTTATTGAAAAAAAAAATTGTTTGTTAAGAGGTCCGTGTCAGTAGTTTGAACATTTAAATTTT

Coding sequences of Glyma.15g201800

Limit To All Plant Sequences

>Glyma.15g201800.1 sequence-type=CDS polypeptide=Glyma.15g201800.1.p locus=Glyma.15g201800 ID=Glyma.15g201800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCATAGTTTGTGAACTTTTGGTACATGACCAAAACACAATGGCTGGAATGCTTCCTGGAGTTGAATGTGCTAGAAGGAGAAGGTTACATCGATGTTTGGATTCAAATTCAACTTCTTTAACTTCACATGCATCCACAAGGCGTTCTTCTTTCTGTTTGTATGCTAGTAACCACGAATGTCGCCTTTCCTTATCCTCTTCACTGCAAAGAAGCATGTTATACCAGCCACACCCTGATGAGAATATGGGAGGAGTGGTCAGAGAAGCCAAACAGAGATTGGATGACAAGTTCAGAGCTCATAGGAATTCAGAAAACAAAAGGCAAAACAGCACAAAATGTGTGGAGGGCAGAAGAACACGCATAGCAGAGTTTCACACAGAGGTATATGGGTCGAAGAAAAGTGGTTCAAGGAGGTTCAGTTGGACCAAATGGAGCTGGAAGGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAATCATTCAGAGTTGGAGAGACACTGATCCATCTTCCTTGTGCCCATAGGTTCCATGACAGATGCTTAAAACCATGGTTGGAAAATAATTCTCATTGTCCATGCTGTAGAACCACCATTTTTTCCCTCTAG

>Glyma.15g201800.2 sequence-type=CDS polypeptide=Glyma.15g201800.2.p locus=Glyma.15g201800 ID=Glyma.15g201800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTGGATTCAAATTCAACTTCTTTAACTTCACATGCATCCACAAGGCGTTCTTCTTTCTGTTTCAAAGAAGCATGTTATACCAGCCACACCCTGATGAGAATATGGGAGGAGTGGTCAGAGAAGCCAAACAGAGATTGGATGACAAGTTCAGAGCTCATAGGAATTCAGAAAACAAAAGGCAAAACAGCACAAAATGTGTGGAGGGCAGAAGAACACGCATAGCAGAGTTTCACACAGAGGTATATGGGTCGAAGAAAAGTGGTTCAAGGAGGTTCAGTTGGACCAAATGGAGCTGGAAGGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAATCATTCAGAGTTGGAGAGACACTGATCCATCTTCCTTGTGCCCATAGGTTCCATGACAGATGCTTAAAACCATGGTTGGAAAATAATTCTCATTGTCCATGCTGTAGAACCACCATTTTTTCCCTCTAG

Predicted protein sequences of Glyma.15g201800

Limit To All Plant Sequences

>Glyma.15g201800.1.p sequence-type=predicted peptide transcript=Glyma.15g201800.1 locus=Glyma.15g201800 ID=Glyma.15g201800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFIVCELLVHDQNTMAGMLPGVECARRRRLHRCLDSNSTSLTSHASTRRSSFCLYASNHECRLSLSSSLQRSMLYQPHPDENMGGVVREAKQRLDDKFRAHRNSENKRQNSTKCVEGRRTRIAEFHTEVYGSKKSGSRRFSWTKWSWKASEQEDCAVCLESFRVGETLIHLPCAHRFHDRCLKPWLENNSHCPCCRTTIFSL*

>Glyma.15g201800.2.p sequence-type=predicted peptide transcript=Glyma.15g201800.2 locus=Glyma.15g201800 ID=Glyma.15g201800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFGFKFNFFNFTCIHKAFFFLFQRSMLYQPHPDENMGGVVREAKQRLDDKFRAHRNSENKRQNSTKCVEGRRTRIAEFHTEVYGSKKSGSRRFSWTKWSWKASEQEDCAVCLESFRVGETLIHLPCAHRFHDRCLKPWLENNSHCPCCRTTIFSL*

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