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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G20410.1 | AT | gamma-soluble NSF attachment protein | JGI | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | EnsemblGenomes | N/A | IEA |
| GO:0061025 | GO-bp | membrane fusion | EnsemblGenomes | N/A | IEA |
| GO:0005622 | GO-cc | intracellular | EnsemblGenomes | N/A | IEA |
| GO:0005774 | GO-cc | vacuolar membrane | EnsemblGenomes | N/A | IEA |
| GO:0031201 | GO-cc | SNARE complex | EnsemblGenomes | N/A | IEA |
| GO:0005483 | GO-mf | soluble NSF attachment protein activity | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0019905 | GO-mf | syntaxin binding | EnsemblGenomes | N/A | IEA |
| KOG1585 | KOG | Protein required for fusion of vesicles in vesicular transport, gamma-SNAP | JGI | N/A | IEA |
| PTHR13768 | Panther | SOLUBLE NSF ATTACHMENT PROTEIN (SNAP) | JGI | N/A | IEA |
| PTHR13768:SF2 | Panther | GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN | JGI | N/A | IEA |
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Glyma.15g191200 not represented in the dataset |
Glyma.15g191200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g083100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g21990 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g191200.1 sequence-type=CDS polypeptide=Glyma.15g191200.1.p locus=Glyma.15g191200 ID=Glyma.15g191200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGCTTCTGATCCCGACAAGTTGATGGTCAAAGCTGATAAACTAACAAGACTCAGTCTCACGAGGTGGAGTGCGGATTGGAAAAGTGCTACTGTTCTTTATGAGCAGGCAGCTAATGGGTTTAGAGTTGCCAAGGACTATGAGAATGCTAAAATAGCATATGAGAAAGCTTCGAAAGGACAAGAAATGCTTTCTTCACCTTGGGATGCGGCTAAGCACATGGAATCCGCTGCTGCTCTCGCAAAGGATCTAAGACACTGGCAAGAAGTTGTGGACTTCTATCGAAAGGCATCTGAATTATATATGGAGTGTGGGAGACCACAACCTGCATCAGATGCTCTTGCAAAGGGAGCCCGTGCTCTGGAAGATAGCATGTCTGAAGAAGCTATTCAGCTATATACAGATGCTTGTACGATTCTCGAAGATGATGGAAGAGAACAAATGGCCTTTGATCTTTATCGTGCTGCCACTAATGTTTATATAAAACTTGAAAAATATACAGATGCAGCATCTTTCATGTTGAGATTGGGCTTTGCAGCTGACAAGTGTAATGCTACCAATAGCCAGTGCAAGGCATATCTTAATGCAATTGTTATCTACCTTTATGCCCATGACTTTAACCAAGCTGAGAAGTGTTATAATGACTGTTCTCAGATTGATGCTTTTCTGAGAAGTGACCAGAATCGTTGTGCTAGCAACCTACTTGCTGCCTACACAGATGGAGATGTTGAAGAAATCAAACGTATTGCTCAGTCAAGTGTTATTTCACATCTTGACCATGTGATCATTAAGCTTGCGAGGAAACTTCCAACAGGCGATGTGAGTTCATTGAAGGCTAACAAGGCTGAAGATGAAGAGGAGCCACTCGATGAAAATGACCTCACTTAA
>Glyma.15g191200.1.p sequence-type=predicted peptide transcript=Glyma.15g191200.1 locus=Glyma.15g191200 ID=Glyma.15g191200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASDPDKLMVKADKLTRLSLTRWSADWKSATVLYEQAANGFRVAKDYENAKIAYEKASKGQEMLSSPWDAAKHMESAAALAKDLRHWQEVVDFYRKASELYMECGRPQPASDALAKGARALEDSMSEEAIQLYTDACTILEDDGREQMAFDLYRAATNVYIKLEKYTDAASFMLRLGFAADKCNATNSQCKAYLNAIVIYLYAHDFNQAEKCYNDCSQIDAFLRSDQNRCASNLLAAYTDGDVEEIKRIAQSSVISHLDHVIIKLARKLPTGDVSSLKANKAEDEEEPLDENDLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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