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Report for Sequence Feature Glyma.15g185000

Feature Type:gene_model
Chromosome:Gm15
Start:18557883
stop:18561134
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g185000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48350.1AT Ribosomal L18p/L5e family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
GO:0008097GO-mf 5S rRNA binding EnsemblGenomesN/AIEA
PF00861PFAM Ribosomal L18p/L5e family JGI N/AIEA

Expression Patterns of Glyma.15g185000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g185000
ParalogEvidenceComments
Glyma.09g077600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g185000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g20680 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g185000
>Glyma.15g185000.1 sequence-type=CDS polypeptide=Glyma.15g185000.1.p locus=Glyma.15g185000 ID=Glyma.15g185000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTAGCTTCTTCGCTCTCCTTCCTCCATTCTTGCACATCCCCCTCTTCCTCTTCCTTATTGTCAATTTCACCTCCAAACCCCAAACCCTCTCACTTCCTACCTTTCGTGGTCGAAGCCAAAGACAGGACCCGCAGGGAAGACAGGACCGCTCGCCACACTCGCATCAGAAAGAAGGTCGAAGGGACGCCCGAGAGGCCGAGGCTGTCCGTGTTCCGGTCGAACAAGCATCTCTCTGTGCAGGTGATTGATGACACCGCAATGCGCACGCTTGCTTCGGTGTCGACAATGCAGAAGACGGTTGCTGATGAGTTCAACTACTCCGCTGGCCCTACAGTTGAAGTAGCAAAGAGGATGGGTGAGATCATTGCAAAATCCTGTTTGGAGAAGGGGATCACAAAGGTTGCCTTTGATCGAGGTGGATACCCATACCATGGCCGTGTTCAAGCACTTGCTGAAGCAGCCCGTGAACATGGCCTAGATTTCTAA
Predicted protein sequences of Glyma.15g185000
>Glyma.15g185000.1.p sequence-type=predicted peptide transcript=Glyma.15g185000.1 locus=Glyma.15g185000 ID=Glyma.15g185000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLASSLSFLHSCTSPSSSSLLSISPPNPKPSHFLPFVVEAKDRTRREDRTARHTRIRKKVEGTPERPRLSVFRSNKHLSVQVIDDTAMRTLASVSTMQKTVADEFNYSAGPTVEVAKRMGEIIAKSCLEKGITKVAFDRGGYPYHGRVQALAEAAREHGLDF*






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