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Report for Sequence Feature Glyma.15g183400

Feature Type:gene_model
Chromosome:Gm15
Start:18240668
stop:18247283
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g183400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79940.1AT DnaJ / Sec63 Brl domains-containing protein JGI N/AIEA
GO:0031204GO-bp posttranslational protein targeting to membrane, translocation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0030176GO-cc integral component of endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0008565GO-mf protein transporter activity EnsemblGenomesN/AIEA
KOG0721 KOG Molecular chaperone (DnaJ superfamily) JGI N/AIEA
PTHR24075Panther FAMILY NOT NAMED JGI N/AIEA
PF00226PFAM DnaJ domain JGI N/AIEA
PF02889PFAM Sec63 Brl domain JGI N/AIEA

Expression Patterns of Glyma.15g183400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g183400
ParalogEvidenceComments
Glyma.09g075400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g183400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g20400 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g183400
>Glyma.15g183400.1 sequence-type=CDS polypeptide=Glyma.15g183400.1.p locus=Glyma.15g183400 ID=Glyma.15g183400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTTCAGAGGAGAATAGTGCACTGTTCCCAATATTCATTTTGACGATAATGGCCATTCCTATTGTGCCATATACAATAACAAAGTTGTGCCGTGCTGCCAGTAAGAAATCAAAGAGCATTCACTGTCATTGCTCTGAGTGCTCGCGGTCCGGGAAGTACCATAAATCGATATTCAAGAGGATTTCGAATGTCTCAACCTGTAGTAACTTTACATTGTTACTACTTTGGGTGGTTATGATTGTTCTGGTTTATTACATAAAGACCATGAGTCGTGAGATTGAAATTTTCGATCCATTTAATATTCTAGGATTAGAGCCTGGAGCGGCTGAGTCTGAAATAAAGAAAAAGTATAGGAGACTTTCTATTCAATACCATCCAGATAAAAATCCGGATCCAGAGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAATAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGGCAGGCAGGGATTCCAAATGGGTATAGCTCTTCCTCAGTTCCTGCTAAATATTGATGGGGCATCTGGTGGAATACTTCTGCTTTGGATTGTTGGTGTGTGTATTCTCTTGCCATTGGTCATTGCTGTTGTTTATCTCTCCAGATCATCAAAGTATACCGGAAACTATGTGATGCATCAAACACTTTCTACTTACTATTACCTTATGAAGCCTTCTTTGGCCCCCAGCAAAGTCATGGATGTCTTCATCAAGGCTGCTGAATATATGGAAATTCCAGTTCGTAGGACTGATGATGAACCTCTTCAGAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTTGACCTCAAAAACATCAAGCAGGAGCAGGCTAAATTTTGGAAGCAACATCCTGCACTGGTTAAGACAGAGCTGTTAGTTCAAGCTCAGTTGACTCGTGAACTTGCAGCCTTGTCTCCATCTTTACAAAGTGATTTCAGACGAATTTTAGAAACAGCACCCCGCCTACTTGAAGAATTAATTAAGATGGCAGTTATACCACGGAATGCTCAGGGCCATGGATGGCTGAGGCCTGCAATTGGTGTTGTTGAGCTTTCTCAATGTATCGTCCAGGCTGTTCCTCTTAGTGCTAGAAAGTCTACTGGTGGATCACCTGAAGGAATTGCACCATTTCTGCAGTTGCCACATATAAGTGAGACTATTATTATTAAGAAGGTGGCCCGCAAGGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCTGGAGCGAGCTGACCTGCTTATTCAAACAGGTGGGTTATCTTCTACGGAAGTGCAAGACATTGAGACGGTACTGGACATGATGCCTTCCTTGACACTTGAGGTAACTTGTGAGACTGAAGGTGAAGAGGGTATACAAGAGGGTGACATTGTGACCCTCCATGCTTGGATAAATGTTAAAAGGGGTAATGGCCTGATTGGTGCCCTTCCACATGCCCCCTACTACCCATTTCATAAGGAAGAAAATTACTGGTTTTTGCTTGCGGATTCTGTTTCAAATAATGTGTGGTTTTCTCAGAAGGTTAGTTTCATGGATGAAGCTGCTGCTGTAACTTCTGCATCTAAGGCAATTGAGGAGTCTATGGAGGGGTCAGGAGCAAATGTGAAGGAGACCAGTAAGGCAGTTGCAGAAGCAGTTGAGAAGGTGAAAGGGGGCTCTAGATTAGTATTGGGCAAGTTCCAGGCCCCATCAGAGGGTAACTACAGTTTGACTTGCTATTGTTTGTGTGATTCTTGGTTGGGCTGTGACAGAAGGACAAATTTAAAGCTCAAAGTTTTGAAACGGACTCGGGCTGGCACCAGGGCTGCTGTTTTGGCTGATGAAGGACCTATCATGGAGGATGGAGTTGAGGAGGATGAGGACAACGAGGATGAAGAGTATGATGATGACTACGAGAGTGAGTACAGTGAAGATGAAGAGGATGATCAGAACACAAAAAATAAGCAACAAGCTGCCAATGGCACTGTGAATAAACATGGTAAAGCTGCAGAAAGTTCAGGCTCTGAGGAGGAATGA
Predicted protein sequences of Glyma.15g183400
>Glyma.15g183400.1.p sequence-type=predicted peptide transcript=Glyma.15g183400.1 locus=Glyma.15g183400 ID=Glyma.15g183400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASEENSALFPIFILTIMAIPIVPYTITKLCRAASKKSKSIHCHCSECSRSGKYHKSIFKRISNVSTCSNFTLLLLWVVMIVLVYYIKTMSREIEIFDPFNILGLEPGAAESEIKKKYRRLSIQYHPDKNPDPEAHKYFVEYIAKAYQALTDPIARENYEKYGHPDGRQGFQMGIALPQFLLNIDGASGGILLLWIVGVCILLPLVIAVVYLSRSSKYTGNYVMHQTLSTYYYLMKPSLAPSKVMDVFIKAAEYMEIPVRRTDDEPLQKLFMLVRSELNLDLKNIKQEQAKFWKQHPALVKTELLVQAQLTRELAALSPSLQSDFRRILETAPRLLEELIKMAVIPRNAQGHGWLRPAIGVVELSQCIVQAVPLSARKSTGGSPEGIAPFLQLPHISETIIIKKVARKVRTFQELHDMDSLERADLLIQTGGLSSTEVQDIETVLDMMPSLTLEVTCETEGEEGIQEGDIVTLHAWINVKRGNGLIGALPHAPYYPFHKEENYWFLLADSVSNNVWFSQKVSFMDEAAAVTSASKAIEESMEGSGANVKETSKAVAEAVEKVKGGSRLVLGKFQAPSEGNYSLTCYCLCDSWLGCDRRTNLKLKVLKRTRAGTRAAVLADEGPIMEDGVEEDEDNEDEEYDDDYESEYSEDEEDDQNTKNKQQAANGTVNKHGKAAESSGSEEE*






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