SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G43190.1 | AT | sucrose synthase 4 | JGI | N/A | IEA |
| GO:0005985 | GO-bp | sucrose metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005985 | GO-bp | sucrose metabolic process | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0016157 | GO-mf | sucrose synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| KOG0853 | KOG | Glycosyltransferase | JGI | N/A | IEA |
| PTHR12526 | Panther | GLYCOSYLTRANSFERASE | JGI | N/A | IEA |
| PTHR12526:SF27 | Panther | SUCROSE SYNTHASE 2-RELATED | JGI | N/A | IEA |
| PF00534 | PFAM | Glycosyl transferases group 1 | JGI | N/A | IEA |
| PF00862 | PFAM | Sucrose synthase | JGI | N/A | IEA |
| PWY-3801 | SoyCyc9 | sucrose degradation II (sucrose synthase) | Plant Metabolic Network | ISS | |
| PWY-7345 | SoyCyc9 | superpathway of anaerobic sucrose degradation | Plant Metabolic Network | ISS | |
| GN7V-60190 | SoyCyc9-rxn | sucrose synthase | Plant Metabolic Network | ISS |
|
Glyma.15g182600 not represented in the dataset |
Glyma.15g182600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g073600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g20180 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g182600.2 sequence-type=transcript locus=Glyma.15g182600 ID=Glyma.15g182600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 tagagggagagagagacagagtgagaaagCTTTTGGACTTCGTTGAATTTGGTGAAAATGGTTTTCCTCTTCTTTCTTTTTCTTTTGTATGTTTCTCTTTGTTCTGTTTCGTGCTCCTTGCCTATAAATTAACACCTCCACCTCATTCTCCATTCATTCATTTCGTCTTCCCCTTCACCCcttcttcttttacgttcattctgttttcatagTGAGGATCTTCTGAAGAAATGGCAAATCACCCTTTGACACACTCTCACTCTTTCCGCGAGAGGTTTGATGAAACTCTCACTGGTCACAGGAATGAAATTTTGGCCCTTTTGTCAAGGCTTGAAGCCAAGGGCAAGGGAATCCTGCAACACCACCAGGTGGTTGCAGAGTTTGAAGAAATCCCTGAGGAGAGCAGAAAGAAACTCCAAGGTGGTGTCTTTGGAGAAGTTTTGAGATCTACACAGGAAGCCATAGTGCTGCCACCATTTGTGGCTCTGGCTGTTCGACCAAGGCCTGGTGTTTGGGAGTATCTGCGGGTGAATGTGCACATGCTTGTTGTTGATGAGCTGCTTCCTGCTGAGTATCTGCGTTTCAAGGAGGAGCTTGTTGAGGGAAGTTCTAATGGCAACTTTGTGCTTGAGTTGGACTTTGAACCGTTTAATGCATCCTTCCCTCGCCCAACTCTGAACAAGTCCATTGGAAATGGCGTCGAGTTCCTCAACCGCCACCTTTCGGCCAAGCTCTTCCATGACAAGGAGAGCATGCAGCCACTGCTTGAATTCCTCAGGCTTCACAGTTATAAGGGAAAGaccatgatgttgaatgacaaagttcaaagcctggattctctccagcatgttttgagaaaagcagaagagtatctgacttcagttgctcctgaaacaccctactcagaattcgaaaacaaattccgggaaattggtttggagagggggtggggtgacatcgccgagcgtgtcctcgagatgatccagcttctcttggaccttcttgaggcacccgacccttgcaccctcgagacattccttggaagagttcctatggtcttcaatgttgttatcctttctccccatggttactttgcccaagataatgtcttggggtaccctgacactggtggacaggttgtttacatcttggatcaagttcgtgccttggagaatgagatgctcaaccgcatcaagaaacaaggccttgatatcacccctcgtattctcattATTACTCGTCTTCTCCCTGatgcagtaggaactacctgtggccaacgtctagagagggtatatgatactgaatattgtgacattctccgagttcctttcagaaccgaaaagggaattgttcgcaaatggatctcaagattcgaagtctggccatacctagagacttaCACTGAGGAtgttgcccttgaacttgccaaggagttgcaagccaagccagatctgatcgttggaaactacagtgatggaaacattgttgcctctttgttagcacataaattaggagtaactcagtgtaccattgctcatgctctagaaaagaccaagtaccctgagtctgacatttactggaaaaaatttgaagagaaatatcacttctcatgccaatttactgctgatctttttgcaatgaaccacacagactttatcatcaccagcaccttccaagagattgctggaaGCaaggacactgttggacagtatgagagtcacactgccttcacccttccaggactctaccgtgttgttcacggtattgatccctttgatccaaagttcaacatcgtctctcccggtgccgacatgagcatatacttcccatacactgaaaCTGAGCGTAGGTTAACAGAGTTCCACCCCGACATTGAAGAGCTTCTTTACAGCTCAGTGGAGAATGAAGAACACATATGTGTATTGAAGGACCGCAACAAGCCGATCATCTTCACCATGGCAAGACTTGACCGTGTGAAGAACATCACGGGACTTGTGGAGTGGTATGGCAAGAATGCGCGCCTCCGCGAGTTGGTAAACCTCGTGGTGGTGGCCGGAGACAGGAGGAAGGAGTCCAAGGACTTGGAAGAGAAGGCCGAGATGAAGAAGATGTATGGCCTCATCGAGACCTACAAGTTGAACGGCCAATTCAGATGGATCTCCTCTCAGATGAACCGTGTGAGGAACGGAGAGCTCTACCGTGTCATCTGTGACACAAGGGGTGCCTTTGTGCAGCCTGCAGTTTATGAGGCCTTTGGGTTGACTGTGGTTGAGGCCATGACTTGTGGGTTACCAACATTTGCCACATGCAATGGTGGTCCTGCTGAGATCATTGTGCATGGAAAATCTGGTTACCACATTGACCCTTACCATGGTGACCGTGCTGCTGAGATCCTTGTTGAGTTCTTTGAAAAGAGCAAGGCTGACCCATCTCACTGGGACAAAATCTCCCAGGGTGGACTCAAGCGTATTCATGAGAAGTATGCACATTGCCCTAAACAATCCTCACATCCTGTCACCATAATTTTACTAAAATATGTTTCCAGACATTTCGGTAAAACTTGATTTTAGTCCCGGATTTTACATTTGATCAATTTGATCTCTGAATTTTTAATTTTGTCCTTCCTCACTGTAAAAACTGTTTGTAAAGAGGGACGAAAACAAATGTCCAGGGAACTAAATTGATCAAAATTAAAATACAGGAACTAATACTATCATTTTTTTACAAAAAATACATAAATTAATAACATATTTTACCTCCAATTTTTT
>Glyma.15g182600.1 sequence-type=CDS polypeptide=Glyma.15g182600.1.p locus=Glyma.15g182600 ID=Glyma.15g182600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAAATCACCCTTTGACACACTCTCACTCTTTCCGCGAGAGGTTTGATGAAACTCTCACTGGTCACAGGAATGAAATTTTGGCCCTTTTGTCAAGGCTTGAAGCCAAGGGCAAGGGAATCCTGCAACACCACCAGGTGGTTGCAGAGTTTGAAGAAATCCCTGAGGAGAGCAGAAAGAAACTCCAAGGTGGTGTCTTTGGAGAAGTTTTGAGATCTACACAGGAAGCCATAGTGCTGCCACCATTTGTGGCTCTGGCTGTTCGACCAAGGCCTGGTGTTTGGGAGTATCTGCGGGTGAATGTGCACATGCTTGTTGTTGATGAGCTGCTTCCTGCTGAGTATCTGCGTTTCAAGGAGGAGCTTGTTGAGGGAAGTTCTAATGGCAACTTTGTGCTTGAGTTGGACTTTGAACCGTTTAATGCATCCTTCCCTCGCCCAACTCTGAACAAGTCCATTGGAAATGGCGTCGAGTTCCTCAACCGCCACCTTTCGGCCAAGCTCTTCCATGACAAGGAGAGCATGCAGCCACTGCTTGAATTCCTCAGGCTTCACAGTTATAAGGGAAAGACCATGATGTTGAATGACAAAGTTCAAAGCCTGGATTCTCTCCAGCATGTTTTGAGAAAAGCAGAAGAGTATCTGACTTCAGTTGCTCCTGAAACACCCTACTCAGAATTCGAAAACAAATTCCGGGAAATTGGTTTGGAGAGGGGGTGGGGTGACATCGCCGAGCGTGTCCTCGAGATGATCCAGCTTCTCTTGGACCTTCTTGAGGCACCCGACCCTTGCACCCTCGAGACATTCCTTGGAAGAGTTCCTATGGTCTTCAATGTTGTTATCCTTTCTCCCCATGGTTACTTTGCCCAAGATAATGTCTTGGGGTACCCTGACACTGGTGGACAGGTTGTTTACATCTTGGATCAAGTTCGTGCCTTGGAGAATGAGATGCTCAACCGCATCAAGAAACAAGGCCTTGATATCACCCCTCGTATTCTCATTATTACTCGTCTTCTCCCTGATGCAGTAGGAACTACCTGTGGCCAACGTCTAGAGAGGGTATATGATACTGAATATTGTGACATTCTCCGAGTTCCTTTCAGAACCGAAAAGGGAATTGTTCGCAAATGGATCTCAAGATTCGAAGTCTGGCCATACCTAGAGACTTACACTGAGGATGTTGCCCTTGAACTTGCCAAGGAGTTGCAAGCCAAGCCAGATCTGATCGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTAGCACATAAATTAGGAGTAACTCAGTGTACCATTGCTCATGCTCTAGAAAAGACCAAGTACCCTGAGTCTGACATTTACTGGAAAAAATTTGAAGAGAAATATCACTTCTCATGCCAATTTACTGCTGATCTTTTTGCAATGAACCACACAGACTTTATCATCACCAGCACCTTCCAAGAGATTGCTGGAAGCAAGGACACTGTTGGACAGTATGAGAGTCACACTGCCTTCACCCTTCCAGGACTCTACCGTGTTGTTCACGGTATTGATCCCTTTGATCCAAAGTTCAACATCGTCTCTCCCGGTGCCGACATGAGCATATACTTCCCATACACTGAAACTGAGCGTAGGTTAACAGAGTTCCACCCCGACATTGAAGAGCTTCTTTACAGCTCAGTGGAGAATGAAGAACACATATGTGTATTGAAGGACCGCAACAAGCCGATCATCTTCACCATGGCAAGACTTGACCGTGTGAAGAACATCACGGGACTTGTGGAGTGGTATGGCAAGAATGCGCGCCTCCGCGAGTTGGTAAACCTCGTGGTGGTGGCCGGAGACAGGAGGAAGGAGTCCAAGGACTTGGAAGAGAAGGCCGAGATGAAGAAGATGTATGGCCTCATCGAGACCTACAAGTTGAACGGCCAATTCAGATGGATCTCCTCTCAGATGAACCGTGTGAGGAACGGAGAGCTCTACCGTGTCATCTGTGACACAAGGGGTGCCTTTGTGCAGCCTGCAGTTTATGAGGCCTTTGGGTTGACTGTGGTTGAGGCCATGACTTGTGGGTTACCAACATTTGCCACATGCAATGGTGGTCCTGCTGAGATCATTGTGCATGGAAAATCTGGTTACCACATTGACCCTTACCATGGTGACCGTGCTGCTGAGATCCTTGTTGAGTTCTTTGAAAAGAGCAAGGCTGACCCATCTCACTGGGACAAAATCTCCCAGGGTGGACTCAAGCGTATTCATGAGAAGTACACATGGCAAATTTACTCTGACAGGCTCTTGACACTCACTGGTGTGTATGGCTTCTGGAAGCATGTGACCAATCTTGAACGCCGTGAGAGCAAACGTTACCTTGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTGCCCCTTGCTATTGAAGAGTAA >Glyma.15g182600.2 sequence-type=CDS polypeptide=Glyma.15g182600.2.p locus=Glyma.15g182600 ID=Glyma.15g182600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAAATCACCCTTTGACACACTCTCACTCTTTCCGCGAGAGGTTTGATGAAACTCTCACTGGTCACAGGAATGAAATTTTGGCCCTTTTGTCAAGGCTTGAAGCCAAGGGCAAGGGAATCCTGCAACACCACCAGGTGGTTGCAGAGTTTGAAGAAATCCCTGAGGAGAGCAGAAAGAAACTCCAAGGTGGTGTCTTTGGAGAAGTTTTGAGATCTACACAGGAAGCCATAGTGCTGCCACCATTTGTGGCTCTGGCTGTTCGACCAAGGCCTGGTGTTTGGGAGTATCTGCGGGTGAATGTGCACATGCTTGTTGTTGATGAGCTGCTTCCTGCTGAGTATCTGCGTTTCAAGGAGGAGCTTGTTGAGGGAAGTTCTAATGGCAACTTTGTGCTTGAGTTGGACTTTGAACCGTTTAATGCATCCTTCCCTCGCCCAACTCTGAACAAGTCCATTGGAAATGGCGTCGAGTTCCTCAACCGCCACCTTTCGGCCAAGCTCTTCCATGACAAGGAGAGCATGCAGCCACTGCTTGAATTCCTCAGGCTTCACAGTTATAAGGGAAAGACCATGATGTTGAATGACAAAGTTCAAAGCCTGGATTCTCTCCAGCATGTTTTGAGAAAAGCAGAAGAGTATCTGACTTCAGTTGCTCCTGAAACACCCTACTCAGAATTCGAAAACAAATTCCGGGAAATTGGTTTGGAGAGGGGGTGGGGTGACATCGCCGAGCGTGTCCTCGAGATGATCCAGCTTCTCTTGGACCTTCTTGAGGCACCCGACCCTTGCACCCTCGAGACATTCCTTGGAAGAGTTCCTATGGTCTTCAATGTTGTTATCCTTTCTCCCCATGGTTACTTTGCCCAAGATAATGTCTTGGGGTACCCTGACACTGGTGGACAGGTTGTTTACATCTTGGATCAAGTTCGTGCCTTGGAGAATGAGATGCTCAACCGCATCAAGAAACAAGGCCTTGATATCACCCCTCGTATTCTCATTATTACTCGTCTTCTCCCTGATGCAGTAGGAACTACCTGTGGCCAACGTCTAGAGAGGGTATATGATACTGAATATTGTGACATTCTCCGAGTTCCTTTCAGAACCGAAAAGGGAATTGTTCGCAAATGGATCTCAAGATTCGAAGTCTGGCCATACCTAGAGACTTACACTGAGGATGTTGCCCTTGAACTTGCCAAGGAGTTGCAAGCCAAGCCAGATCTGATCGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTAGCACATAAATTAGGAGTAACTCAGTGTACCATTGCTCATGCTCTAGAAAAGACCAAGTACCCTGAGTCTGACATTTACTGGAAAAAATTTGAAGAGAAATATCACTTCTCATGCCAATTTACTGCTGATCTTTTTGCAATGAACCACACAGACTTTATCATCACCAGCACCTTCCAAGAGATTGCTGGAAGCAAGGACACTGTTGGACAGTATGAGAGTCACACTGCCTTCACCCTTCCAGGACTCTACCGTGTTGTTCACGGTATTGATCCCTTTGATCCAAAGTTCAACATCGTCTCTCCCGGTGCCGACATGAGCATATACTTCCCATACACTGAAACTGAGCGTAGGTTAACAGAGTTCCACCCCGACATTGAAGAGCTTCTTTACAGCTCAGTGGAGAATGAAGAACACATATGTGTATTGAAGGACCGCAACAAGCCGATCATCTTCACCATGGCAAGACTTGACCGTGTGAAGAACATCACGGGACTTGTGGAGTGGTATGGCAAGAATGCGCGCCTCCGCGAGTTGGTAAACCTCGTGGTGGTGGCCGGAGACAGGAGGAAGGAGTCCAAGGACTTGGAAGAGAAGGCCGAGATGAAGAAGATGTATGGCCTCATCGAGACCTACAAGTTGAACGGCCAATTCAGATGGATCTCCTCTCAGATGAACCGTGTGAGGAACGGAGAGCTCTACCGTGTCATCTGTGACACAAGGGGTGCCTTTGTGCAGCCTGCAGTTTATGAGGCCTTTGGGTTGACTGTGGTTGAGGCCATGACTTGTGGGTTACCAACATTTGCCACATGCAATGGTGGTCCTGCTGAGATCATTGTGCATGGAAAATCTGGTTACCACATTGACCCTTACCATGGTGACCGTGCTGCTGAGATCCTTGTTGAGTTCTTTGAAAAGAGCAAGGCTGACCCATCTCACTGGGACAAAATCTCCCAGGGTGGACTCAAGCGTATTCATGAGAAGTATGCACATTGCCCTAAACAATCCTCACATCCTGTCACCATAATTTTACTAAAATATGTTTCCAGACATTTCGGTAAAACTTGA
>Glyma.15g182600.1.p sequence-type=predicted peptide transcript=Glyma.15g182600.1 locus=Glyma.15g182600 ID=Glyma.15g182600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MANHPLTHSHSFRERFDETLTGHRNEILALLSRLEAKGKGILQHHQVVAEFEEIPEESRKKLQGGVFGEVLRSTQEAIVLPPFVALAVRPRPGVWEYLRVNVHMLVVDELLPAEYLRFKEELVEGSSNGNFVLELDFEPFNASFPRPTLNKSIGNGVEFLNRHLSAKLFHDKESMQPLLEFLRLHSYKGKTMMLNDKVQSLDSLQHVLRKAEEYLTSVAPETPYSEFENKFREIGLERGWGDIAERVLEMIQLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLNRIKKQGLDITPRILIITRLLPDAVGTTCGQRLERVYDTEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDVALELAKELQAKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDPFDPKFNIVSPGADMSIYFPYTETERRLTEFHPDIEELLYSSVENEEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNARLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTRGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGYHIDPYHGDRAAEILVEFFEKSKADPSHWDKISQGGLKRIHEKYTWQIYSDRLLTLTGVYGFWKHVTNLERRESKRYLEMFYALKYRKLAESVPLAIEE* >Glyma.15g182600.2.p sequence-type=predicted peptide transcript=Glyma.15g182600.2 locus=Glyma.15g182600 ID=Glyma.15g182600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MANHPLTHSHSFRERFDETLTGHRNEILALLSRLEAKGKGILQHHQVVAEFEEIPEESRKKLQGGVFGEVLRSTQEAIVLPPFVALAVRPRPGVWEYLRVNVHMLVVDELLPAEYLRFKEELVEGSSNGNFVLELDFEPFNASFPRPTLNKSIGNGVEFLNRHLSAKLFHDKESMQPLLEFLRLHSYKGKTMMLNDKVQSLDSLQHVLRKAEEYLTSVAPETPYSEFENKFREIGLERGWGDIAERVLEMIQLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLNRIKKQGLDITPRILIITRLLPDAVGTTCGQRLERVYDTEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDVALELAKELQAKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDPFDPKFNIVSPGADMSIYFPYTETERRLTEFHPDIEELLYSSVENEEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNARLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTRGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGYHIDPYHGDRAAEILVEFFEKSKADPSHWDKISQGGLKRIHEKYAHCPKQSSHPVTIILLKYVSRHFGKT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
