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Report for Sequence Feature Glyma.15g180300

Feature Type:gene_model
Chromosome:Gm15
Start:17395773
stop:17396186
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g180300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38620.1AT myb domain protein 4 JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0030154GO-bp cell differentiation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000981GO-mf RNA polymerase II transcription factor activity, sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0001135GO-mf transcription factor activity, RNA polymerase II transcription factor recruiting EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0044212GO-mf transcription regulatory region DNA binding EnsemblGenomesN/AIEA
PTHR10641Panther MYB-LIKE DNA-BINDING PROTEIN MYB JGI N/AIEA

Expression Patterns of Glyma.15g180300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g180300 not represented in the dataset
Glyma.15g180300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.15g180300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g19931 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g180300
>Glyma.15g180300.1 sequence-type=CDS polypeptide=Glyma.15g180300.1.p locus=Glyma.15g180300 ID=Glyma.15g180300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCTTTCAATTTTTCTTCTTCTCTGTTTTCAAGGTCTTGCGAGATGTGGAAAGAGTCGCAGACTAAGGTGGCTGAATTACCTAAGGCCAAACCTCAAAAGAGGAAACTACACCAAGGAAGAGGAGGAAACTATTATCAAGCTGCACCGACATCTGGGTAATAGGTGCGAAAATCTTTTCCCAACTAGAATTACCGCTACACAAGCTTGA
Predicted protein sequences of Glyma.15g180300
>Glyma.15g180300.1.p sequence-type=predicted peptide transcript=Glyma.15g180300.1 locus=Glyma.15g180300 ID=Glyma.15g180300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWLSIFLLLCFQGLARCGKSRRLRWLNYLRPNLKRGNYTKEEEETIIKLHRHLGNRCENLFPTRITATQA*






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