Glyma.15g178600

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Report for Sequence Feature Glyma.15g178600

Feature Type:	gene_model
Chromosome:	Gm15
Start:	17040321
stop:	17041991
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g178600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05830.1	AT	NagB/RpiA/CoA transferase-like superfamily protein	JGI	N/A	IEA
GO:0044237	GO-bp	cellular metabolic process	EnsemblGenomes	N/A	IEA
GO:0044237	GO-bp	cellular metabolic process	JGI	N/A	IEA
PTHR10233	Panther	TRANSLATION INITIATION FACTOR EIF-2B	JGI	N/A	IEA
PTHR10233:SF6	Panther	METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE	JGI	N/A	IEA
PF01008	PFAM	Initiation factor 2 subunit family	JGI	N/A	IEA
PWY-4361	SoyCyc9	S-methyl-5-thio-α-D-ribose 1-phosphate degradation	Plant Metabolic Network		ISS
PWY-7270	SoyCyc9	L-methionine salvage cycle II (plants)	Plant Metabolic Network		ISS
PWY-7528	SoyCyc9	L-methionine salvage cycle I (bacteria and plants)	Plant Metabolic Network		ISS
GN7V-53707	SoyCyc9-rxn	5-methylthioribose-1-phosphate isomerase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.15g178600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g178600 not represented in the dataset	Glyma.15g178600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g178600

Paralog	Evidence	Comments
Glyma.09g070700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g178600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g19690	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.15g178600

Limit To All Plant Sequences

>Glyma.15g178600.1 sequence-type=CDS polypeptide=Glyma.15g178600.1.p locus=Glyma.15g178600 ID=Glyma.15g178600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATATAGATGCTGCTGAAGTTATGCTTGAGGATGATGTTGCCTCAAATAGAGCTATTGGTTCGTATGGAGCTAGTATTATTCAACATCAAACAGAGAAACAAAAGTTTTCTGTTTTGACTCATTGCAATACTGGAAGTCTAGCCACAGCTGGATATGGTACTGCTCTGGGTGTGATCCGTGCACTTCACAGTGCTGGAGTTCTAGAAAGGGTTTATTGCACAGAAACACGCCCATTCAATCAAGGATCTAGACTCACTGCTTTTGAGTTGGTGCATGAAAAATTATCAGGAACTCTTATTTCCAATTCTGCTGCAGCTGCAATTAATGAAAGCAGGACATGTGACACAGCCAACAAAATAGGAACCGACAGCGTTGCCTTGTCTGCTAAGTTTCATAATGTACCTTTCTATGTGGCTGCACCCCTTACTTCCAATGATCTATCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGTTGCATTTTATTCTCTAACCATTTCATGTTCTTTGAGCAGGGTGTCGTTACAAAGACAACTGCTGGTGGTGCATTTGACATCAAAGCTTTCGTACAGAAAACTGGTTAA

Predicted protein sequences of Glyma.15g178600

Limit To All Plant Sequences

>Glyma.15g178600.1.p sequence-type=predicted peptide transcript=Glyma.15g178600.1 locus=Glyma.15g178600 ID=Glyma.15g178600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYIDAAEVMLEDDVASNRAIGSYGASIIQHQTEKQKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERVYCTETRPFNQGSRLTAFELVHEKLSGTLISNSAAAAINESRTCDTANKIGTDSVALSAKFHNVPFYVAAPLTSNDLSLSSGQEIVIEESCILFSNHFMFFEQGVVTKTTAGGAFDIKAFVQKTG*

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