SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.15g175800

Feature Type:gene_model
Chromosome:Gm15
Start:16559357
stop:16563411
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g175800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G12080.1AT mechanosensitive channel of small conductance-like 10 JGI N/AIEA
GO:0006820GO-bp anion transport EnsemblGenomesN/AIEA
GO:0034220GO-bp ion transmembrane transport EnsemblGenomesN/AIEA
GO:0050982GO-bp detection of mechanical stimulus EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008381GO-mf mechanosensitive ion channel activity EnsemblGenomesN/AIEA
KOG4629 KOG Predicted mechanosensitive ion channel JGI N/AIEA
PF00924PFAM Mechanosensitive ion channel JGI N/AIEA

Expression Patterns of Glyma.15g175800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g175800
ParalogEvidenceComments
Glyma.09g067800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g175800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g19320 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g175800
>Glyma.15g175800.2 sequence-type=transcript locus=Glyma.15g175800 ID=Glyma.15g175800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTTTGatatatatatatatatatatatatataGACACACAGTCTACAGTAACTATTTCGGATTCAGATAAAATTGTCGAACGAGTTTGGATTCTTTGCAGGGGGGATATGGAGTAGATATTAACCAACAGTTCCATCTATTATATCTGTACTTCTGTTGTTTTGGCAGCAAGCTTAACATTTCCGTTTCTACAAGCGGCATTCTTAGAAAGTTTCAAACTTTCCTGGAAAATATCCATTTTCACTAACCCCAGTAACCCTGTTGCTAGTTTCAGCTTCAATATTGCTGAAAATCGTTGTTGTACTGATTGAAATCTAACACTGCGTTTGGAGAAGCTAGAAAGTTATCACCTTGTCATGGAAGAAGACAAAGGCGTGGCAGACAAGAAAGTGACAAAGAACGAGGTGTTACTACGAATTTCAGACTCTGAAGAAGCCATGCATGCTGAGAAGGATCAAAGAGAGTCTAGAAGTTCCCTAGAAGCTGAAAGCAGTTCCCTTTCTCCTCAGCACAGCACCCACATAGGTAAAGGGTTTACAGATTCTCATGGTGAACTCACAGAGCTTGAGAATCTAAGAAACAAAGGTCAAGTTTCCACAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGATCGGAATTTTCGAGGCCAAAGTCCAGAATGGTGGAGCCACCATGTCCAAAAGATGCAAACTTTGTTGAAGAACAGGCTCAAATGACAAGTTCCAATTCATCTGCATGGAATTCTCCCAACAAGAATGCTCCTGAAGCAACTATTGTTACCCCAAGAACCCCCTTGCCTGGGACTCCTGGGGAGGAAGAAGATGATGATGAAGAAGTGTACAAGACTGCACATGTTGAAATGAGGAAGAGATCTGGTAAGAAGTGTAGAGTATTGGGTTTTGTTGAGTGGTATGCTTTTGTTTGCATAATGGGGTTTTTAATTGCAAGCTTGACAGTTCATAAGTTGCAACATAGGGAAATCTGGGGTTTGGAACTGTGGAAATGGTGTGTGTTGGTGTCGGTTATACTATGTGGTAGACTGGTCACTGAGTGGTTTATCAATGTTCTGGTCTTCTTGATTGAGAGGAACTTCTTGTTTAAGAAGAAGGTCTTGTATTTTGTTTATGGTGTGCAGAAGAGTGTTCAGGGCTTTATATGGCTAAGTTTGGTTCTCTTGACATGGGTTCTGCTTTTCCACCACGGAGTGGAGAGAACCCGAAATGTTAGTAGGATTCTTAATTACATAACAAGGGCATTTGTTTCTTGTCTTATTGGAGCAGCTATATGGTTAGCCAAAACATTGTTCATAAAGCTGTTAGCTTCAAATTTTCAATCTACTAGATTTTTTGATAGGGTTCAAGAATCAATCTTTCATCAATATATTCTGAGGACACTTTCGGGTCTTCCCTTGATGAACATGTCTGCAAAAGTAGGCAAGACTTCAAGTAGTGGTCAACTCAGTTTTAAGACCATGATTAATGAGAATGAAGGGAAGGAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACAAGAGAAAGTTTCTGCTTGGACTATGAAAGGGTTGATTGATGTGATAAGGAGTTCTGGGTTGTCTACCATCTCCTATACACCAGAGAGTGCCGATGAAGATGAGAGTGATCAGAAAGATAATGAAATTACTAGTGAGTGGGAGGCAAAGGCAGCTGCTTATAGAATTTTCAGGAATGTTGCCAAGCCAGGAAACAAGTATATTGAGAAGGATGACCTCTTGCGATTCATGAAAAATGAAAAAGTGGAAAATGTGCTTCCACTATTTGAAGGGGCAGTTGAGACAGGAAGAATTAAGAGGAAGTCTCTGAAGAACTGGCTGGTGAAAGTCTACCTTGAACGCCGATCACTTGTACATTCACTAAATGATACCAAAACTGCTGTTGATGACTTGAATATGCTTGCTTCTCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCGTTTGATGTTGGTGATCGCTGTGTCATTGATGGTGTTCAGATGGTTGTGGAAGAGATGAACATACTAAGTACAATCTTTTTGAGATATGACAATGAGAAGATTTTCTATCCAAATTCAGTTCTGGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCTGTTGAATTTGCTGTTGATGTTTCTACTTCTATTGAAAGTATTGGAGCTTTAAAGACGAAGTTAAAAGCATATTTGGAGAGTAAGCCTCAACACTGGCGCCCCAACCACAGCGTATTGGTTAAGGATATTGAGAATGTAAATAAGATGAAAATGGCTTTTTATGTTACTCACACCATAAATTTTCAGAATTATGGGGATAAGAACAACCGAAGATCTGAATTAGTCCTGGAGTTAAAGAAAATTCTTGAAGATCTTAATATTAAATATCATCTGCTGCCCCAAGAAGTTCATCTCAGCCATGTAAGGTCATAAGACTCAACAGCACAGACATTTTGAAGATACCTTATCCTTTCATACGGTGCAAGTGTGTAGCACAAATTTTCTGTGCTATTATTATTGTTCTAGACTAATGGTTTCCCTCATAGTCTATCCAGTTTGAGATCAAAGATGGTGTGACAAATTGATGATTCAGTTGTTTCTAGGAAAATGTGAATTTGGTTTGTGCACTCAGCGTTTCACTATGAATTAGCTGAGGTCAAGAAAGAAAGAAAGAGGAAATTTAATGGCATTGTTCTGAGTAACAAAGATCACTCCAAGAGCTCTTACTTGAAGAACACAAGTTGTGTCATGTCTTTGTACTCTTGTGAAGTTGCAAATTGCACAAAGAATGCCATGCCAAGTTGCCAAATAATAAAGAAAAGGGACTGGCTGTGAGGATAAACATTACTCATTAGAAGATATGCAAAATACAAACTCTAGTTCTTAATCAGGATTCAGAAAATATGTATGAAGAAGAAAATAATCGTGTTTTACTTTTTCAGAAAAGACTGAAAATATTTATTTATTATTTTCAATTTTGAATATGTTTTTGAATTTTT
Coding sequences of Glyma.15g175800
>Glyma.15g175800.1 sequence-type=CDS polypeptide=Glyma.15g175800.1.p locus=Glyma.15g175800 ID=Glyma.15g175800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAAGACAAAGGCGTGGCAGACAAGAAAGTGACAAAGAACGAGGTGTTACTACGAATTTCAGACTCTGAAGAAGCCATGCATGCTGAGAAGGATCAAAGAGAGTCTAGAAGTTCCCTAGAAGCTGAAAGCAGTTCCCTTTCTCCTCAGCACAGCACCCACATAGGTAAAGGGTTTACAGATTCTCATGGTGAACTCACAGAGCTTGAGAATCTAAGAAACAAAGGTCAAGTTTCCACAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGATCGGAATTTTCGAGGCCAAAGTCCAGAATGGTGGAGCCACCATGTCCAAAAGATGCAAACTTTGTTGAAGAACAGGCTCAAATGACAAGTTCCAATTCATCTGCATGGAATTCTCCCAACAAGAATGCTCCTGAAGCAACTATTGTTACCCCAAGAACCCCCTTGCCTGGGACTCCTGGGGAGGAAGAAGATGATGATGAAGAAGTGTACAAGACTGCACATGTTGAAATGAGGAAGAGATCTGGTAAGAAGTGTAGAGTATTGGGTTTTGTTGAGTGGTATGCTTTTGTTTGCATAATGGGGTTTTTAATTGCAAGCTTGACAGTTCATAAGTTGCAACATAGGGAAATCTGGGGTTTGGAACTGTGGAAATGGTGTGTGTTGGTGTCGGTTATACTATGTGGTAGACTGGTCACTGAGTGGTTTATCAATGTTCTGGTCTTCTTGATTGAGAGGAACTTCTTGTTTAAGAAGAAGGTCTTGTATTTTGTTTATGGTGTGCAGAAGAGTGTTCAGGGCTTTATATGGCTAAGTTTGGTTCTCTTGACATGGGTTCTGCTTTTCCACCACGGAGTGGAGAGAACCCGAAATGTTAGTAGGATTCTTAATTACATAACAAGGGCATTTGTTTCTTGTCTTATTGGAGCAGCTATATGGTTAGCCAAAACATTGTTCATAAAGCTGTTAGCTTCAAATTTTCAATCTACTAGATTTTTTGATAGGGTTCAAGAATCAATCTTTCATCAATATATTCTGAGGACACTTTCGGGTCTTCCCTTGATGAACATGTCTGCAAAAGTAGGCAAGACTTCAAGTAGTGGTCAACTCAGTTTTAAGACCATGATTAATGAGAATGAAGGGAAGGAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACAAGAGAAAGTTTCTGCTTGGACTATGAAAGGGTTGATTGATGTGATAAGGAGTTCTGGGTTGTCTACCATCTCCTATACACCAGAGAGTGCCGATGAAGATGAGAGTGATCAGAAAGATAATGAAATTACTAGTGAGTGGGAGGCAAAGGCAGCTGCTTATAGAATTTTCAGGAATGTTGCCAAGCCAGGAAACAAGTATATTGAGAAGGATGACCTCTTGCGATTCATGAAAAATGAAAAAGTGGAAAATGTGCTTCCACTATTTGAAGGGGCAGTTGAGACAGGAAGAATTAAGAGGAAGTCTCTGAAGAACTGGCTGGTGAAAGTCTACCTTGAACGCCGATCACTTGTACATTCACTAAATGATACCAAAACTGCTGTTGATGACTTGAATATGCTTGCTTCTGTAATTGTGCTTATTGTGATCACTATTGTGTGGCTTCTTATAATGGGTTTCTTAAACACTCAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTTTTTATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCGTTTGATGTTGGTGATCGCTGTGTCATTGATGGTGTTCAGATGGTTGTGGAAGAGATGAACATACTAAGTACAATCTTTTTGAGATATGACAATGAGAAGATTTTCTATCCAAATTCAGTTCTGGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAGTGATTCTGTTGAATTTGCTGTTGATGTTTCTACTTCTATTGAAAGTATTGGAGCTTTAAAGACGAAGTTAAAAGCATATTTGGAGAGTAAGCCTCAACACTGGCGCCCCAACCACAGCGTATTGGTTAAGGATATTGAGAATGTAAATAAGATGAAAATGGCTTTTTATGTTACTCACACCATAAATTTTCAGAATTATGGGGATAAGAACAACCGAAGATCTGAATTAGTCCTGGAGTTAAAGAAAATTCTTGAAGATCTTAATATTAAATATCATCTGCTGCCCCAAGAAGTTCATCTCAGCCATGTAAGGTCATAA

>Glyma.15g175800.2 sequence-type=CDS polypeptide=Glyma.15g175800.2.p locus=Glyma.15g175800 ID=Glyma.15g175800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAAGACAAAGGCGTGGCAGACAAGAAAGTGACAAAGAACGAGGTGTTACTACGAATTTCAGACTCTGAAGAAGCCATGCATGCTGAGAAGGATCAAAGAGAGTCTAGAAGTTCCCTAGAAGCTGAAAGCAGTTCCCTTTCTCCTCAGCACAGCACCCACATAGGTAAAGGGTTTACAGATTCTCATGGTGAACTCACAGAGCTTGAGAATCTAAGAAACAAAGGTCAAGTTTCCACAGAGTTGGTGACAACTACAAAGAGGTTGATGGGTCGATCGGAATTTTCGAGGCCAAAGTCCAGAATGGTGGAGCCACCATGTCCAAAAGATGCAAACTTTGTTGAAGAACAGGCTCAAATGACAAGTTCCAATTCATCTGCATGGAATTCTCCCAACAAGAATGCTCCTGAAGCAACTATTGTTACCCCAAGAACCCCCTTGCCTGGGACTCCTGGGGAGGAAGAAGATGATGATGAAGAAGTGTACAAGACTGCACATGTTGAAATGAGGAAGAGATCTGGTAAGAAGTGTAGAGTATTGGGTTTTGTTGAGTGGTATGCTTTTGTTTGCATAATGGGGTTTTTAATTGCAAGCTTGACAGTTCATAAGTTGCAACATAGGGAAATCTGGGGTTTGGAACTGTGGAAATGGTGTGTGTTGGTGTCGGTTATACTATGTGGTAGACTGGTCACTGAGTGGTTTATCAATGTTCTGGTCTTCTTGATTGAGAGGAACTTCTTGTTTAAGAAGAAGGTCTTGTATTTTGTTTATGGTGTGCAGAAGAGTGTTCAGGGCTTTATATGGCTAAGTTTGGTTCTCTTGACATGGGTTCTGCTTTTCCACCACGGAGTGGAGAGAACCCGAAATGTTAGTAGGATTCTTAATTACATAACAAGGGCATTTGTTTCTTGTCTTATTGGAGCAGCTATATGGTTAGCCAAAACATTGTTCATAAAGCTGTTAGCTTCAAATTTTCAATCTACTAGATTTTTTGATAGGGTTCAAGAATCAATCTTTCATCAATATATTCTGAGGACACTTTCGGGTCTTCCCTTGATGAACATGTCTGCAAAAGTAGGCAAGACTTCAAGTAGTGGTCAACTCAGTTTTAAGACCATGATTAATGAGAATGAAGGGAAGGAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACAAGAGAAAGTTTCTGCTTGGACTATGAAAGGGTTGATTGATGTGATAAGGAGTTCTGGGTTGTCTACCATCTCCTATACACCAGAGAGTGCCGATGAAGATGAGAGTGATCAGAAAGATAATGAAATTACTAGTGAGTGGGAGGCAAAGGCAGCTGCTTATAGAATTTTCAGGAATGTTGCCAAGCCAGGAAACAAGTATATTGAGAAGGATGACCTCTTGCGATTCATGAAAAATGAAAAAGTGGAAAATGTGCTTCCACTATTTGAAGGGGCAGTTGAGACAGGAAGAATTAAGAGGAAGTCTCTGAAGAACTGGCTGGTGAAAGTCTACCTTGAACGCCGATCACTTGTACATTCACTAAATGATACCAAAACTGCTGTTGATGACTTGAATATGCTTGCTTCTCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGA
Predicted protein sequences of Glyma.15g175800
>Glyma.15g175800.1.p sequence-type=predicted peptide transcript=Glyma.15g175800.1 locus=Glyma.15g175800 ID=Glyma.15g175800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEDKGVADKKVTKNEVLLRISDSEEAMHAEKDQRESRSSLEAESSSLSPQHSTHIGKGFTDSHGELTELENLRNKGQVSTELVTTTKRLMGRSEFSRPKSRMVEPPCPKDANFVEEQAQMTSSNSSAWNSPNKNAPEATIVTPRTPLPGTPGEEEDDDEEVYKTAHVEMRKRSGKKCRVLGFVEWYAFVCIMGFLIASLTVHKLQHREIWGLELWKWCVLVSVILCGRLVTEWFINVLVFLIERNFLFKKKVLYFVYGVQKSVQGFIWLSLVLLTWVLLFHHGVERTRNVSRILNYITRAFVSCLIGAAIWLAKTLFIKLLASNFQSTRFFDRVQESIFHQYILRTLSGLPLMNMSAKVGKTSSSGQLSFKTMINENEGKEEQVIDVDKLKKMKQEKVSAWTMKGLIDVIRSSGLSTISYTPESADEDESDQKDNEITSEWEAKAAAYRIFRNVAKPGNKYIEKDDLLRFMKNEKVENVLPLFEGAVETGRIKRKSLKNWLVKVYLERRSLVHSLNDTKTAVDDLNMLASVIVLIVITIVWLLIMGFLNTQVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMVVEEMNILSTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFAVDVSTSIESIGALKTKLKAYLESKPQHWRPNHSVLVKDIENVNKMKMAFYVTHTINFQNYGDKNNRRSELVLELKKILEDLNIKYHLLPQEVHLSHVRS*

>Glyma.15g175800.2.p sequence-type=predicted peptide transcript=Glyma.15g175800.2 locus=Glyma.15g175800 ID=Glyma.15g175800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEDKGVADKKVTKNEVLLRISDSEEAMHAEKDQRESRSSLEAESSSLSPQHSTHIGKGFTDSHGELTELENLRNKGQVSTELVTTTKRLMGRSEFSRPKSRMVEPPCPKDANFVEEQAQMTSSNSSAWNSPNKNAPEATIVTPRTPLPGTPGEEEDDDEEVYKTAHVEMRKRSGKKCRVLGFVEWYAFVCIMGFLIASLTVHKLQHREIWGLELWKWCVLVSVILCGRLVTEWFINVLVFLIERNFLFKKKVLYFVYGVQKSVQGFIWLSLVLLTWVLLFHHGVERTRNVSRILNYITRAFVSCLIGAAIWLAKTLFIKLLASNFQSTRFFDRVQESIFHQYILRTLSGLPLMNMSAKVGKTSSSGQLSFKTMINENEGKEEQVIDVDKLKKMKQEKVSAWTMKGLIDVIRSSGLSTISYTPESADEDESDQKDNEITSEWEAKAAAYRIFRNVAKPGNKYIEKDDLLRFMKNEKVENVLPLFEGAVETGRIKRKSLKNWLVKVYLERRSLVHSLNDTKTAVDDLNMLASLRLYLKLLYLFL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo