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Report for Sequence Feature Glyma.15g174100

Feature Type:gene_model
Chromosome:Gm15
Start:16127986
stop:16130672
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g174100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G06510.1AT replication protein A 1A JGI N/AIEA
GO:0006260GO-bp DNA replication EnsemblGenomesN/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006310GO-bp DNA recombination EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PTHR23273Panther REPLICATION FACTOR A 1, RFA1 JGI N/AIEA
PF01336PFAM OB-fold nucleic acid binding domain JGI N/AIEA
PF04057PFAM Replication factor-A protein 1, N-terminal domain JGI N/AIEA
PF08646PFAM Replication factor-A C terminal domain JGI N/AIEA

Expression Patterns of Glyma.15g174100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g174100 not represented in the dataset
Glyma.15g174100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.15g174100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g19090 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g174100
>Glyma.15g174100.1 sequence-type=CDS polypeptide=Glyma.15g174100.1.p locus=Glyma.15g174100 ID=Glyma.15g174100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGCTGAATCTCACGGCAAACGCGATCCCGGCGATAATCGGTGGCGACGTGAACGCGAAACCGCTGGTTCAGGTTCTGGACGTGGCGCTAGTCTCCAATAGCAACAACTCGCAGCAGCAGCAGCAGAGGTACCGTCTTCTGCTATCCGACGCCGTTTTCTCTCACCACGCGATGCTCGCAACTCAGCTCAACGACCGAGTCCGAACCGGTCGAGTTCAGAAGGGTTCGGTTGTTCAGCTTCTCGATTATATATGCACTCCTCTCAAGAACCGCAAGATTATTGTGATTCTAAACATGGAAACTATAATGGATGAGTTTGAGATCATTGGGAATCCAAAGCCATATATGGATTCTGATATACCAACAGTGAGAGCTTCAGATTCAGCTTCAGCTGATAGCACTGTTGAGAATTTGCCCAGGAGTTATAATAGTAATAATAGTTCTGCTGGTCAAAATGCAAGTCACAATAACACGCAGAATTTCAGGCCAACTATTCAACCTCCATACCAACCACCTCCACTTTACAAAGGCCGTGGGCCAGTTGTGAAAAATGAGGCACCAGCACGCATCATTCCTATAGCTGCTTTAAATCCGTATCAGGGTCGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGGGATCTGCGCCGCTATAATAATGCTCGTGGTGATGGGAAAGTCTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTTGTTGACCGCTTCTATAATGTAATTGAGGTTGGTAAAGTTTACATGATATCCAAAGGTAGCTTGAAACCTGCTCAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTTTGTTGGAATCATCTTCAATGGTTGAGCTCTGCCCAGACGAGGATGGTTCTATACCTAGACAGCAGTTCTCCTTCAGGCCTATTAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTAGTGACATCTGTGAATCCTTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATTTTGAGTCTGAAGGACAGTTCTGGCAGTAGTGTTGAACTTACACTGTGGGGCGAATTCTGCAACAGGGAAGGACAACAGCTTCAAGACATGGTGGATGCTGGATTTTTCCCAATTTTAGCAGTCAAAACTGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGTTCTATTTCTACCACGCAGCTTTTCATAAATCCTGATTTTCCTGAGGCTCATAGCTTAAGAGAATGGTTTGAACTGGTAGGAAAAGATTCTGCCTCCTTATCGATTTCTAAGGACATTATTCCCGGAGCATTGAAGAATGAGGTCCGCAAAACTGTGTCTCAAATCAAGGATGAAGGTCTAGGGCGGTCAGACAAGCCAGACTGGATAACAGTAAGGGCTGCTATATTATTCATCAAGACAGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAATAAGAAAGTGACTAGGCTAGGAAACACAAGGTGGCAATGTGATAGATGCAACCAAGAATTTGAGGAGTGTGATTACCGATACCTTCTCCAAGTTCAAATTCTTGATGGCACAGGATTAGCTTGGGTAACTGCTTTCCAAGAAGCAGGGGAAGAGATTATGGATTACTCAGCAAAGGATCTGTACTTTTTGAAACATGAAGAGCAGGATGATGAGAAGTTTGGAGAAATAATCAAGAGCCGACTCTTCAACCAGTTCATGTTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAACAGAAGGTGAAGATTACTGTGGTCAAGGCTGATAAGGTGAACTACTCTTCAGAGAGTAGATACATGCTTGATACGATTTCCAAGTTTTGTAGGCAGTAA
Predicted protein sequences of Glyma.15g174100
>Glyma.15g174100.1.p sequence-type=predicted peptide transcript=Glyma.15g174100.1 locus=Glyma.15g174100 ID=Glyma.15g174100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLNLTANAIPAIIGGDVNAKPLVQVLDVALVSNSNNSQQQQQRYRLLLSDAVFSHHAMLATQLNDRVRTGRVQKGSVVQLLDYICTPLKNRKIIVILNMETIMDEFEIIGNPKPYMDSDIPTVRASDSASADSTVENLPRSYNSNNSSAGQNASHNNTQNFRPTIQPPYQPPPLYKGRGPVVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEILLESSSMVELCPDEDGSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGSSVELTLWGEFCNREGQQLQDMVDAGFFPILAVKTGKVNDFSGKSIGSISTTQLFINPDFPEAHSLREWFELVGKDSASLSISKDIIPGALKNEVRKTVSQIKDEGLGRSDKPDWITVRAAILFIKTDTFCYTACPLMIGDRQCNKKVTRLGNTRWQCDRCNQEFEECDYRYLLQVQILDGTGLAWVTAFQEAGEEIMDYSAKDLYFLKHEEQDDEKFGEIIKSRLFNQFMFRLKIKEELYGDEQKVKITVVKADKVNYSSESRYMLDTISKFCRQ*






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