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Report for Sequence Feature Glyma.15g173300

Feature Type:gene_model
Chromosome:Gm15
Start:15893875
stop:15902960
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g173300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G54160.1AT nuclear factor Y, subunit A5 JGI N/AIEA
AT1G72830.1AT nuclear factor Y, subunit A3 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0016602GO-cc CCAAT-binding factor complex EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
PTHR12632Panther TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED JGI N/AIEA
PTHR12632:SF5Panther JGI N/AIEA
PF02045PFAM CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B JGI N/AIEA

Expression Patterns of Glyma.15g173300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g173300
ParalogEvidenceComments
Glyma.09g068400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g173300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g18970 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g173300
>Glyma.15g173300.2 sequence-type=transcript locus=Glyma.15g173300 ID=Glyma.15g173300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGTTACTGCGTCGAGTCAAGTGTGTGTATTAATGGGTTTGTTTTGTCGTTTCATCAAACAAAGCCTTCAACAAGCAAAGCAAAGAAGTGAAGAGAGAGAGAGATCATTCTAGAGACAGAGAGAAATTAGCTTCAGTAGATATTAGTGGTGGGTATGTGTGTGTGTGGGTTTGGGTTTCAAGAGAGGAGACATGCTTAACTTCAACCCAACACTTCAAGTACTTGCTTCTTCATACCCTTACCAGATCCCAAAGGTCACGATCTAATTTTAAGTGATTAGTCTGATGAGCATTTTGAAGGTTACATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGAGAGAAGAAACTGATCGAAACCGACTTCACCGGTCAGGCAAATCATCCTTGGCTTAGTCACTTTTGTCTGTGTCTTAATGTGTTCGTACTAAATGATCATTTTGAGAGACTCTTCAGTCTGCATTAGCACTAATAAGACCTTTCCAATTGCTTTGGCATGTATTTTAAAGTTGCTATTGTACTGGATTCTGAACTGGATTGGAATAGTCTGTGCATGGAACTAGTATGTTTGTGTTAGTTACTGTTGAATTTCCTTCTTTAAAATATGTGATGTCCAGCAGTGGATTATTAACTTTTCAGGTTTACTATAGTATTCATTAACTTTCCAGATGATTAATATCTGCTAAAAAATCTGGTTGAATACTTTC

>Glyma.15g173300.3 sequence-type=transcript locus=Glyma.15g173300 ID=Glyma.15g173300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTGAAGTTAGAATTTTTGCTCTTTCCCATTTTGCATGTGTAGTTTGAGGTCACTACTGACTTAAGATTTGGAAAGTGGTTGTTAAGGAGGCTAGAAGCAGCTTAGTAATTTTCTGATCGTTCAAAGTTGGGTCACGATCTAATTTTAAGTGATTAGTCTGATGAGCATTTTGAAGGTTACATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGAGAGAAGAAACTGATCGAAACCGACTTCACCGGTCAGGCAAATCATCCTTGGCTTAGTCACTTTTGTCTGTGTCTTAATGTGTTCGTACTAAATGATCATTTTGAGAGACTCTTCAGTCTGCATTAGCACTAATAAGACCTTTCCAATTGCTTTGGCATGTATTTTAAAGTTGCTATTGTACTGGATTCTGAACTGGATTGGAATAGTCTGTGCATGGAACTAGTATGTTTGTGTTAGTTACTGTTGAATTTCCTTCTTTAAAATATGTGATGTCCAGCAGTGGATTATTAACTTTTCAGGTTTACTATAGTATTCATTAACTTTCCAGATGATTAATATCTGCTAAAAAATCTGGTTGAATACTTTC

>Glyma.15g173300.4 sequence-type=transcript locus=Glyma.15g173300 ID=Glyma.15g173300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
cttcctctcctattgtttttctccccagcagtccctaaaatcacaATGATGTTACTGTTTTTATTATGTTTTAGAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGAGAGAAGAAACTGATCGAAACCGACTTCACCGGTCAGGCAAATCATCCTTGGCTTAGTCACTTTTGTCTGTGTCTTAATGTGTTCGTACTAAATGATCATTTTGAGAGACTCTTCAGTCTGCATTAGCACTAATAAGACCTTTCCAATTGCTTTGGCATGTATTTTAAAGTTGCTATTGTACTGGATTCTGAACTGGATTGGAATAGTCTGTGCATGGAACTAGTATGTTTGTGTTAGTTACTGTTGAATTTCCTTCTTTAAAATATGTGATGTCCAGCAGTGGATTATTAACTTTTCAGGTTTACTATAGTATTCATTAACTTTCCAGATGATTAATATCTGCTAAAAAATCTGGTTGAATACTTTC
Coding sequences of Glyma.15g173300
>Glyma.15g173300.1 sequence-type=CDS polypeptide=Glyma.15g173300.1.p locus=Glyma.15g173300 ID=Glyma.15g173300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGA

>Glyma.15g173300.2 sequence-type=CDS polypeptide=Glyma.15g173300.2.p locus=Glyma.15g173300 ID=Glyma.15g173300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGA

>Glyma.15g173300.3 sequence-type=CDS polypeptide=Glyma.15g173300.3.p locus=Glyma.15g173300 ID=Glyma.15g173300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGA

>Glyma.15g173300.4 sequence-type=CDS polypeptide=Glyma.15g173300.4.p locus=Glyma.15g173300 ID=Glyma.15g173300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGA
Predicted protein sequences of Glyma.15g173300
>Glyma.15g173300.1.p sequence-type=predicted peptide transcript=Glyma.15g173300.1 locus=Glyma.15g173300 ID=Glyma.15g173300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKQFLFLNLPDTEINCSQVDCNHSMAHSSYPYGDPILAYGPQAISHPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPLEVESHSSKDGDNASFITTYSDRPCLSGNNLNFRQQECMFLGNSANMSGAPQCSGGLTFGGAKQRTSVVR*

>Glyma.15g173300.2.p sequence-type=predicted peptide transcript=Glyma.15g173300.2 locus=Glyma.15g173300 ID=Glyma.15g173300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKQFLFLNLPDTEINCSQVDCNHSMAHSSYPYGDPILAYGPQAISHPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPLEVESHSSKDGDNASFITTYSDRPCLSGNNLNFRQQECMFLGNSANMSGAPQCSGGLTFGGAKQRTSVVR*

>Glyma.15g173300.3.p sequence-type=predicted peptide transcript=Glyma.15g173300.3 locus=Glyma.15g173300 ID=Glyma.15g173300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKQFLFLNLPDTEINCSQVDCNHSMAHSSYPYGDPILAYGPQAISHPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPLEVESHSSKDGDNASFITTYSDRPCLSGNNLNFRQQECMFLGNSANMSGAPQCSGGLTFGGAKQRTSVVR*

>Glyma.15g173300.4.p sequence-type=predicted peptide transcript=Glyma.15g173300.4 locus=Glyma.15g173300 ID=Glyma.15g173300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPLEVESHSSKDGDNASFITTYSDRPCLSGNNLNFRQQECMFLGNSANMSGAPQCSGGLTFGGAKQRTSVVR*






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