Glyma.15g173300

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Report for Sequence Feature Glyma.15g173300

Feature Type:	gene_model
Chromosome:	Gm15
Start:	15893875
stop:	15902960
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g173300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54160.1	AT	nuclear factor Y, subunit A5	JGI	N/A	IEA
AT1G72830.1	AT	nuclear factor Y, subunit A3	JGI	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	JGI	N/A	IEA
GO:0016602	GO-cc	CCAAT-binding factor complex	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	sequence-specific DNA binding transcription factor activity	JGI	N/A	IEA
PTHR12632	Panther	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	JGI	N/A	IEA
PTHR12632:SF5	Panther		JGI	N/A	IEA
PF02045	PFAM	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	JGI	N/A	IEA

Expression Patterns of Glyma.15g173300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g173300 not represented in the dataset	Glyma.15g173300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g173300

Paralog	Evidence	Comments
Glyma.09g068400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g173300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g18970	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g173300

Limit To All Plant Sequences

>Glyma.15g173300.2 sequence-type=transcript locus=Glyma.15g173300 ID=Glyma.15g173300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGTTACTGCGTCGAGTCAAGTGTGTGTATTAATGGGTTTGTTTTGTCGTTTCATCAAACAAAGCCTTCAACAAGCAAAGCAAAGAAGTGAAGAGAGAGAGAGATCATTCTAGAGACAGAGAGAAATTAGCTTCAGTAGATATTAGTGGTGGGTATGTGTGTGTGTGGGTTTGGGTTTCAAGAGAGGAGACATGCTTAACTTCAACCCAACACTTCAAGTACTTGCTTCTTCATACCCTTACCAGATCCCAAAGGTCACGATCTAATTTTAAGTGATTAGTCTGATGAGCATTTTGAAGGTTACATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGAGAGAAGAAACTGATCGAAACCGACTTCACCGGTCAGGCAAATCATCCTTGGCTTAGTCACTTTTGTCTGTGTCTTAATGTGTTCGTACTAAATGATCATTTTGAGAGACTCTTCAGTCTGCATTAGCACTAATAAGACCTTTCCAATTGCTTTGGCATGTATTTTAAAGTTGCTATTGTACTGGATTCTGAACTGGATTGGAATAGTCTGTGCATGGAACTAGTATGTTTGTGTTAGTTACTGTTGAATTTCCTTCTTTAAAATATGTGATGTCCAGCAGTGGATTATTAACTTTTCAGGTTTACTATAGTATTCATTAACTTTCCAGATGATTAATATCTGCTAAAAAATCTGGTTGAATACTTTC

>Glyma.15g173300.3 sequence-type=transcript locus=Glyma.15g173300 ID=Glyma.15g173300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTGAAGTTAGAATTTTTGCTCTTTCCCATTTTGCATGTGTAGTTTGAGGTCACTACTGACTTAAGATTTGGAAAGTGGTTGTTAAGGAGGCTAGAAGCAGCTTAGTAATTTTCTGATCGTTCAAAGTTGGGTCACGATCTAATTTTAAGTGATTAGTCTGATGAGCATTTTGAAGGTTACATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGAGAGAAGAAACTGATCGAAACCGACTTCACCGGTCAGGCAAATCATCCTTGGCTTAGTCACTTTTGTCTGTGTCTTAATGTGTTCGTACTAAATGATCATTTTGAGAGACTCTTCAGTCTGCATTAGCACTAATAAGACCTTTCCAATTGCTTTGGCATGTATTTTAAAGTTGCTATTGTACTGGATTCTGAACTGGATTGGAATAGTCTGTGCATGGAACTAGTATGTTTGTGTTAGTTACTGTTGAATTTCCTTCTTTAAAATATGTGATGTCCAGCAGTGGATTATTAACTTTTCAGGTTTACTATAGTATTCATTAACTTTCCAGATGATTAATATCTGCTAAAAAATCTGGTTGAATACTTTC

>Glyma.15g173300.4 sequence-type=transcript locus=Glyma.15g173300 ID=Glyma.15g173300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
cttcctctcctattgtttttctccccagcagtccctaaaatcacaATGATGTTACTGTTTTTATTATGTTTTAGAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGAGAGAAGAAACTGATCGAAACCGACTTCACCGGTCAGGCAAATCATCCTTGGCTTAGTCACTTTTGTCTGTGTCTTAATGTGTTCGTACTAAATGATCATTTTGAGAGACTCTTCAGTCTGCATTAGCACTAATAAGACCTTTCCAATTGCTTTGGCATGTATTTTAAAGTTGCTATTGTACTGGATTCTGAACTGGATTGGAATAGTCTGTGCATGGAACTAGTATGTTTGTGTTAGTTACTGTTGAATTTCCTTCTTTAAAATATGTGATGTCCAGCAGTGGATTATTAACTTTTCAGGTTTACTATAGTATTCATTAACTTTCCAGATGATTAATATCTGCTAAAAAATCTGGTTGAATACTTTC

Coding sequences of Glyma.15g173300

Limit To All Plant Sequences

>Glyma.15g173300.1 sequence-type=CDS polypeptide=Glyma.15g173300.1.p locus=Glyma.15g173300 ID=Glyma.15g173300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGA

>Glyma.15g173300.2 sequence-type=CDS polypeptide=Glyma.15g173300.2.p locus=Glyma.15g173300 ID=Glyma.15g173300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGA

>Glyma.15g173300.3 sequence-type=CDS polypeptide=Glyma.15g173300.3.p locus=Glyma.15g173300 ID=Glyma.15g173300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCAATTTCTCTTTTTGAATCTTCCTGACACCGAGATCAATTGTTCACAAGTTGATTGCAATCACTCAATGGCTCATTCTTCTTATCCCTACGGCGATCCAATTCTTGCTTATGGACCACAAGCTATTAGTCATCCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGA

>Glyma.15g173300.4 sequence-type=CDS polypeptide=Glyma.15g173300.4.p locus=Glyma.15g173300 ID=Glyma.15g173300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCTGAAGATGGACCGATTTATGTCAACGCGAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAACTTGAGGCTCAGAACAAACTTATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGTCGATTTCTGAGTACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAGAAAGAACATCCATTAGAGGTGGAAAGTCATTCCTCAAAAGATGGAGATAATGCATCATTCATAACAACCTACTCCGACCGGCCATGTTTATCTGGCAACAACCTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGAGTGGAGCACCACAGTGCAGTGGGGGACTCACCTTTGGCGGAGCAAAGCAACGCACTTCAGTTGTCCGGTGA

Predicted protein sequences of Glyma.15g173300

Limit To All Plant Sequences

>Glyma.15g173300.1.p sequence-type=predicted peptide transcript=Glyma.15g173300.1 locus=Glyma.15g173300 ID=Glyma.15g173300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKQFLFLNLPDTEINCSQVDCNHSMAHSSYPYGDPILAYGPQAISHPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPLEVESHSSKDGDNASFITTYSDRPCLSGNNLNFRQQECMFLGNSANMSGAPQCSGGLTFGGAKQRTSVVR*

>Glyma.15g173300.2.p sequence-type=predicted peptide transcript=Glyma.15g173300.2 locus=Glyma.15g173300 ID=Glyma.15g173300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKQFLFLNLPDTEINCSQVDCNHSMAHSSYPYGDPILAYGPQAISHPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPLEVESHSSKDGDNASFITTYSDRPCLSGNNLNFRQQECMFLGNSANMSGAPQCSGGLTFGGAKQRTSVVR*

>Glyma.15g173300.3.p sequence-type=predicted peptide transcript=Glyma.15g173300.3 locus=Glyma.15g173300 ID=Glyma.15g173300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKQFLFLNLPDTEINCSQVDCNHSMAHSSYPYGDPILAYGPQAISHPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPLEVESHSSKDGDNASFITTYSDRPCLSGNNLNFRQQECMFLGNSANMSGAPQCSGGLTFGGAKQRTSVVR*

>Glyma.15g173300.4.p sequence-type=predicted peptide transcript=Glyma.15g173300.4 locus=Glyma.15g173300 ID=Glyma.15g173300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPLEVESHSSKDGDNASFITTYSDRPCLSGNNLNFRQQECMFLGNSANMSGAPQCSGGLTFGGAKQRTSVVR*

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