Glyma.15g172700

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Report for Sequence Feature Glyma.15g172700

Feature Type:	gene_model
Chromosome:	Gm15
Start:	15808233
stop:	15814389
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.15g172700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29820.1	AT	homolog of CFIM-25	JGI	N/A	IEA
GO:0006378	GO-bp	mRNA polyadenylation	EnsemblGenomes	N/A	IEA
GO:0006378	GO-bp	mRNA polyadenylation	JGI	N/A	IEA
GO:0005849	GO-cc	mRNA cleavage factor complex	EnsemblGenomes	N/A	IEA
GO:0005849	GO-cc	mRNA cleavage factor complex	JGI	N/A	IEA
GO:0003729	GO-mf	mRNA binding	EnsemblGenomes	N/A	IEA
GO:0003729	GO-mf	mRNA binding	JGI	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
KOG1689	KOG	mRNA cleavage factor I subunit	JGI	N/A	IEA
PTHR13047	Panther	PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT	JGI	N/A	IEA

Expression Patterns of Glyma.15g172700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g172700 not represented in the dataset	Glyma.15g172700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.15g172700

Paralog	Evidence	Comments
Glyma.09g066700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g172700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma15g18871	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.15g172700

Limit To All Plant Sequences

>Glyma.15g172700.2 sequence-type=transcript locus=Glyma.15g172700 ID=Glyma.15g172700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCACCCTCACGCGATTGGGGTGACCTCTTAACCTCAGTCGAAAAATCCCACGCAACAGCCATTGTATCATCATCACTCACACGATTTCAATGAAATGGTTTACGATCTCAACCTCTAGGCATGACACCAACAAAGTGGTTTGTGGGACTCACCCTCTAGGTGGAATGCCAACAAATTGTaggagaagaagaagaagaagTGCCACAGCTTTGCATGATCCAAACAGCGGAAACGATGATCAGAGCCTCGAATTCGATATTTATCCTTTGAGCAGTTACTACTTTGGATCCAAAGATGCCTTTCCCTCCAAATACCTCACCTCAGCTGATCGTGTTCTCAGGATGAAATCCAACTATGCTGCCCGAGGAATACGAACCTGTGTGGAAGCTGTCGTACTGGTTGAATTGTTCAAACATCCTCATTTGTTGCTGTTGCAAATAAGAAATTCCATATATAAACTTCCTGGTGGCCGATTAAGGCCTGGTGAATCAGATACTGATGGATTGAAGCGTAAGCTGGCAAGGAAACTCTCCATTATCGAAGATGGGGATGGGTCAGAATGGGAGGTGGGTGAATGCCTTGAGATGTGGTGGAGGCCTGATTTTGAAACATTAGTGTTTCCTTGTTTGCCACCTAATGTGAAACAGACAAAGGAGTGTATCAAAGTCTTCCTTGTGAAGCTTCCAGAGAGTCGAAAATTCATTGTGCCAAAAAACATGAGGTTGCTTGCAGTCCCATTGTGCCAAGTTCATGAAAATCACAAGACATATGGGAAAATTATATCAGGGGTCCCACAGTTGCTGTCAAAATTCTCTTTCAACATGATTGAATCGTGATACCTGATTGTAACCTATTTTTATCATCCAGAGTTCAAGTGGCCTCATTAGGCAGCCTTTGCTCGTTAGCATCCTCTCCTCTTGTGGTGTCCAGACACAGACTTGTATATATCATATCTTTGATACGAAAAATTATACTGTAATGTTGAAAATAACTGCATGTATTATACTTGCATCCTCTCCTCTTGTGGTGTCCAGACACAGGCTTGTATGTGTCATAGCTTTTATACGAAAAATTATACTGTAATGTTGAAAATAGCTACATATATTATACTTGCATGGTTAGTGTGAAATTTTCTTAGAGTAATGGATTTGACTGGTTCTTTCATTCTGCCTTTGTTTTCACTTGACATGATAATGGATAACACATAAGCTTGCATAGGCATCATATAACTATTAGCATTATGCTTCTAAGTTTCTTGGAAAACATAGAAGGTAAAGAGTTAGGTCTTCATTAAGAACTGTCTGACCGACAAAACAAACAGCTAGTTCATCAGCATGTAACTTGATGCCATGCAAGTGTATTCAGTAAAAGGCTTTGTACTTTTGACTCTTTGATGGCCGTGATGCGAGATTGTGACTTGTTGGCATAGAATCTCTAAGATATACCAAACAGTGAGGTTTTGGCTCTTGAAATGGTGTTTTGAATGCCGGAAGGATCTTGTGGTGCTAGAAAGAATGCTTGAGCAGCTGATCTTGCCAATGCCAAAAGGAGAATCTAGACTGGTTTTGACAGGTTAGAGAAGAGAGTACTGATGCTGCAAGGGAAGGTAATGTTAATAGAGTTGGTGGCAATGGAGGTTTTTTTTATAATTTTTTTTATCGAACTTCTTAGA

Coding sequences of Glyma.15g172700

Limit To All Plant Sequences

>Glyma.15g172700.1 sequence-type=CDS polypeptide=Glyma.15g172700.1.p locus=Glyma.15g172700 ID=Glyma.15g172700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATGGTTTACGATCTCAACCTCTAGGCATGACACCAACAAAGTGGTTTGTGGGACTCACCCTCTAGGTGGAATGCCAACAAATTGTAGGAGAAGAAGAAGAAGAAGTGCCACAGCTTTGCATGATCCAAACAGCGGAAACGATGATCAGAGCCTCGAATTCGATATTTATCCTTTGAGCAGTTACTACTTTGGATCCAAAGATGCCTTTCCCTCCAAATACCTCACCTCAGCTGATCGTGTTCTCAGGATGAAATCCAACTATGCTGCCCGAGGAATACGAACCTGTGTGGAAGCTGTCGTACTGGTTGAATTGTTCAAACATCCTCATTTGTTGCTGTTGCAAATAAGAAATTCCATATATAAACTTCCTGGTGGCCGATTAAGGCCTGGTGAATCAGATACTGATGGATTGAAGCGTAAGCTGGCAAGGAAACTCTCCATTATCGAAGATGGGGATGGGTCAGAATGGGAGGTGGGTGAATGCCTTGAGATGTGGTGGAGGCCTGATTTTGAAACATTAGTGTTTCCTTGTTTGCCACCTAATGTGAAACAGACAAAGGAGTGTATCAAAGTCTTCCTTGTGAAGCTTCCAGAGAGTCGAAAATTCATTGTGCCAAAAAACATGAGGTTGCTTGCAGTCCCATTGTGCCAAGTTCATGAAAATCACAAGAGTTCAAGTGGCCTCATTAGGCAGCCTTTGCTCGTTAGCATCCTCTCCTCTTGTGGTGTCCAGACACAGACTTGTATATATCATATCTTTGATACGAAAAATTATACTGTAATGTTGAAAATAACTGCATGTATTATACTTGCATCCTCTCCTCTTGTGGTGTCCAGACACAGGCTTGTATGTGTCATAGCTTTTATACGAAAAATTATACTGTAA

>Glyma.15g172700.2 sequence-type=CDS polypeptide=Glyma.15g172700.2.p locus=Glyma.15g172700 ID=Glyma.15g172700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATGGTTTACGATCTCAACCTCTAGGCATGACACCAACAAAGTGGTTTGTGGGACTCACCCTCTAGGTGGAATGCCAACAAATTGTAGGAGAAGAAGAAGAAGAAGTGCCACAGCTTTGCATGATCCAAACAGCGGAAACGATGATCAGAGCCTCGAATTCGATATTTATCCTTTGAGCAGTTACTACTTTGGATCCAAAGATGCCTTTCCCTCCAAATACCTCACCTCAGCTGATCGTGTTCTCAGGATGAAATCCAACTATGCTGCCCGAGGAATACGAACCTGTGTGGAAGCTGTCGTACTGGTTGAATTGTTCAAACATCCTCATTTGTTGCTGTTGCAAATAAGAAATTCCATATATAAACTTCCTGGTGGCCGATTAAGGCCTGGTGAATCAGATACTGATGGATTGAAGCGTAAGCTGGCAAGGAAACTCTCCATTATCGAAGATGGGGATGGGTCAGAATGGGAGGTGGGTGAATGCCTTGAGATGTGGTGGAGGCCTGATTTTGAAACATTAGTGTTTCCTTGTTTGCCACCTAATGTGAAACAGACAAAGGAGTGTATCAAAGTCTTCCTTGTGAAGCTTCCAGAGAGTCGAAAATTCATTGTGCCAAAAAACATGAGGTTGCTTGCAGTCCCATTGTGCCAAGTTCATGAAAATCACAAGACATATGGGAAAATTATATCAGGGGTCCCACAGTTGCTGTCAAAATTCTCTTTCAACATGATTGAATCGTGA

Predicted protein sequences of Glyma.15g172700

Limit To All Plant Sequences

>Glyma.15g172700.1.p sequence-type=predicted peptide transcript=Glyma.15g172700.1 locus=Glyma.15g172700 ID=Glyma.15g172700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKWFTISTSRHDTNKVVCGTHPLGGMPTNCRRRRRRSATALHDPNSGNDDQSLEFDIYPLSSYYFGSKDAFPSKYLTSADRVLRMKSNYAARGIRTCVEAVVLVELFKHPHLLLLQIRNSIYKLPGGRLRPGESDTDGLKRKLARKLSIIEDGDGSEWEVGECLEMWWRPDFETLVFPCLPPNVKQTKECIKVFLVKLPESRKFIVPKNMRLLAVPLCQVHENHKSSSGLIRQPLLVSILSSCGVQTQTCIYHIFDTKNYTVMLKITACIILASSPLVVSRHRLVCVIAFIRKIIL*

>Glyma.15g172700.2.p sequence-type=predicted peptide transcript=Glyma.15g172700.2 locus=Glyma.15g172700 ID=Glyma.15g172700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKWFTISTSRHDTNKVVCGTHPLGGMPTNCRRRRRRSATALHDPNSGNDDQSLEFDIYPLSSYYFGSKDAFPSKYLTSADRVLRMKSNYAARGIRTCVEAVVLVELFKHPHLLLLQIRNSIYKLPGGRLRPGESDTDGLKRKLARKLSIIEDGDGSEWEVGECLEMWWRPDFETLVFPCLPPNVKQTKECIKVFLVKLPESRKFIVPKNMRLLAVPLCQVHENHKTYGKIISGVPQLLSKFSFNMIES*

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