SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.15g170700

Feature Type:gene_model
Chromosome:Gm15
Start:15509590
stop:15513122
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g170700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G19480.3AT nucleosome assembly protein 1;2 JGI N/AIEA
GO:0006334GO-bp nucleosome assembly EnsemblGenomesN/AIEA
GO:0006334GO-bp nucleosome assembly JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
KOG1507 KOG Nucleosome assembly protein NAP-1 JGI N/AIEA
PTHR11875Panther TESTIS-SPECIFIC Y-ENCODED PROTEIN JGI N/AIEA
PTHR11875:SF7Panther AT14585P-RELATED JGI N/AIEA
PF00956PFAM Nucleosome assembly protein (NAP) JGI N/AIEA

Proteins Associated with Glyma.15g170700
LocusGene SymbolProtein Name
SNAP-1 nucleosome assembly protein 1

Expression Patterns of Glyma.15g170700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g170700
ParalogEvidenceComments
Glyma.09g064400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g170700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g18600 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g170700
>Glyma.15g170700.2 sequence-type=transcript locus=Glyma.15g170700 ID=Glyma.15g170700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGGGAGAGGAGAAAAAAGATTGGATTTAGACGCCATTGTCAAACCCTTTTCACTTCTCTCTAGGGTTTTAGCActctctctctctctcgttttcgttcttcctttctgcctctctcAGTCACACACCTTCTCGATGACCAACGACAACATCGCCGTGACAGAtctcacttctgCCCTCAATGAAGAGAATCGCGCCGACCTAGTCAATGCTCTCAAGAGCAAGATTCAGAGTCTGGCTGGGGCGCATTCTGATGTTCTAGAGACTCTATCCCCGAATGTCAGGAAGCGTGTTGAATCTCTTAGAGAAATTCAGGGTAAACATGATGAACTAGAGGCAGACTTCTTGAAGGAGAGAGAAGCTCTTGAAGCAAAGTACCAAAAACTGTATCAGCCATTGTACACAAAGCGCTATGAAATTGTAAATGGTGTTACTGAAGTGGAAGGGGCAGCAAATGAATCAACAGATGAATCAGAAGAGAATAAAGAGAAAGGAGTGCCTTCTTTTTGGCTCAATGCAATGAAAAATAATGATGTGTTAGCTGAAGAGATTTCAGAGCGTGATGAAGGTGCTCTCAAGTTTCTTAAAGATATCAAGTGGAGCAGGATAGAAAATCCTAAAGGGTTCAAGCTTGATTTCTTCTTTGATACCAATCCTTACTTTTCAAATACCGTCTTGACAAAAACATATCATATGATTGATGAGGATGAACCTATATTGGAGAAAGCAATTGGGACGGAAATTGAATGGTACCCGGGAAAATGCTTGACTCAGAAGGTTTTGAAGAAGAAGCCTAAGAAGGGTTCAAAGAATGCTAAACCAATTACCAAAACTGAAAGCTGTGAAAGCTTCTTCAATTTTTTCAAACCACCAGAAGTCCCTGAAGATGATGCTGACATTGATGAAGATTTGGCTGAAGAACTTCAGAATCAGATGGAACAAGATTATGACATTGGGTCAACATTAAGAGATAAAATTATCCCTCATGCTGTATCATGGTTTACTGGGGAGGCCGCTCAGGGAGATGAGTTTGAAGACCTGGAGGATGATGAGGACGAAGAGGAAGATGAGGACGAAGATGAGGACGAAGAGGATGACGAGGACGAAGACGATGAAGAGGAGGATGACACTAAGACTAAAAAGAAGAAGAGTGGTAAGGCACAGGCTGGTGATGGTGATGGTGAGCGACCTCCAGAGTGCAAGCAGCAGTAATTGTTTGTTTCTTCGGAGTATCATGTGGCTGATGGGTGTTTTTGAGGTCCTATGGTGCCTGACGGGAAAGTGGGTTTCAATTTCATGCAATTTTTCATAGTCCTTGATTCATTTTCCTCCCTAGATCCGATAGTCTGAATTTATTGAGTCAATTTCTCCTTTTTCCCATATTTTGGGAGAATGTGGTTATATATTTGTAGTCAGGGATGCTGTGATTTGTTACTGTTGGAATTTGTACGTCATTCCAGACACTTCACATATATTATAGGTTGTGCTTTGTTACTATAATTTTTCTTATTAATTTATTTATTCACAATTTTGTTAACTTGAATTTATATTGAGGCAAGAAGTTCATTTTTCCCCCTGC
Coding sequences of Glyma.15g170700
>Glyma.15g170700.1 sequence-type=CDS polypeptide=Glyma.15g170700.1.p locus=Glyma.15g170700 ID=Glyma.15g170700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCAACGACAACATCGCCGTGACAGATCTCACTTCTGCCCTCAATGAAGAGAATCGCGCCGACCTAGTCAATGCTCTCAAGAGCAAGATTCAGAGTCTGGCTGGGGCGCATTCTGATGTTCTAGAGACTCTATCCCCGAATGTCAGGAAGCGTGTTGAATCTCTTAGAGAAATTCAGGGTAAACATGATGAACTAGAGGCAGACTTCTTGAAGGAGAGAGAAGCTCTTGAAGCAAAGTACCAAAAACTGTATCAGCCATTGTACACAAAGCGCTATGAAATTGTAAATGGTGTTACTGAAGTGGAAGGGGCAGCAAATGAATCAACAGATGAATCAGAAGAGAATAAAGAGAAAGGAGTGCCTTCTTTTTGGCTCAATGCAATGAAAAATAATGATGTGTTAGCTGAAGAGATTTCAGAGCGTGATGAAGGTGCTCTCAAGTTTCTTAAAGATATCAAGTGGAGCAGGATAGAAAATCCTAAAGGGTTCAAGCTTGATTTCTTCTTTGATACCAATCCTTACTTTTCAAATACCGTCTTGACAAAAACATATCATATGATTGATGAGGATGAACCTATATTGGAGAAAGCAATTGGGACGGAAATTGAATGGTACCCGGGAAAATGCTTGACTCAGAAGGTTTTGAAGAAGAAGCCTAAGAAGGGTTCAAAGAATGCTAAACCAATTACCAAAACTGAAAGCTGTGAAAGCTTCTTCAATTTTTTCAAACCACCAGAAGTCCCTGAAGATGATGCTGACATTGATGAAGATTTGGCTGAAGAACTTCAGAATCAGATGGAACAAGATTATGACATTGGGTCAACATTAAGAGATAAAATTATCCCTCATGCTGTATCATGGTTTACTGGGGAGGCCGCTCAGGGAGATGAGTTTGAAGACCTGGAGGATGATGAGGACGAAGAGGAAGATGAGGACGAAGATGAGGACGAAGAGGATGACGAGGACGAAGACGATGAAGAGGAGGATGACACTAAGACTAAAAAGAAGTTATCTGCTGTTAAGAAGAGTGGTAAGGCACAGGCTGGTGATGGTGATGGTGAGCGACCTCCAGAGTGCAAGCAGCAGTAA

>Glyma.15g170700.2 sequence-type=CDS polypeptide=Glyma.15g170700.2.p locus=Glyma.15g170700 ID=Glyma.15g170700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCAACGACAACATCGCCGTGACAGATCTCACTTCTGCCCTCAATGAAGAGAATCGCGCCGACCTAGTCAATGCTCTCAAGAGCAAGATTCAGAGTCTGGCTGGGGCGCATTCTGATGTTCTAGAGACTCTATCCCCGAATGTCAGGAAGCGTGTTGAATCTCTTAGAGAAATTCAGGGTAAACATGATGAACTAGAGGCAGACTTCTTGAAGGAGAGAGAAGCTCTTGAAGCAAAGTACCAAAAACTGTATCAGCCATTGTACACAAAGCGCTATGAAATTGTAAATGGTGTTACTGAAGTGGAAGGGGCAGCAAATGAATCAACAGATGAATCAGAAGAGAATAAAGAGAAAGGAGTGCCTTCTTTTTGGCTCAATGCAATGAAAAATAATGATGTGTTAGCTGAAGAGATTTCAGAGCGTGATGAAGGTGCTCTCAAGTTTCTTAAAGATATCAAGTGGAGCAGGATAGAAAATCCTAAAGGGTTCAAGCTTGATTTCTTCTTTGATACCAATCCTTACTTTTCAAATACCGTCTTGACAAAAACATATCATATGATTGATGAGGATGAACCTATATTGGAGAAAGCAATTGGGACGGAAATTGAATGGTACCCGGGAAAATGCTTGACTCAGAAGGTTTTGAAGAAGAAGCCTAAGAAGGGTTCAAAGAATGCTAAACCAATTACCAAAACTGAAAGCTGTGAAAGCTTCTTCAATTTTTTCAAACCACCAGAAGTCCCTGAAGATGATGCTGACATTGATGAAGATTTGGCTGAAGAACTTCAGAATCAGATGGAACAAGATTATGACATTGGGTCAACATTAAGAGATAAAATTATCCCTCATGCTGTATCATGGTTTACTGGGGAGGCCGCTCAGGGAGATGAGTTTGAAGACCTGGAGGATGATGAGGACGAAGAGGAAGATGAGGACGAAGATGAGGACGAAGAGGATGACGAGGACGAAGACGATGAAGAGGAGGATGACACTAAGACTAAAAAGAAGAAGAGTGGTAAGGCACAGGCTGGTGATGGTGATGGTGAGCGACCTCCAGAGTGCAAGCAGCAGTAA
Predicted protein sequences of Glyma.15g170700
>Glyma.15g170700.1.p sequence-type=predicted peptide transcript=Glyma.15g170700.1 locus=Glyma.15g170700 ID=Glyma.15g170700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTNDNIAVTDLTSALNEENRADLVNALKSKIQSLAGAHSDVLETLSPNVRKRVESLREIQGKHDELEADFLKEREALEAKYQKLYQPLYTKRYEIVNGVTEVEGAANESTDESEENKEKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLDFFFDTNPYFSNTVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTESCESFFNFFKPPEVPEDDADIDEDLAEELQNQMEQDYDIGSTLRDKIIPHAVSWFTGEAAQGDEFEDLEDDEDEEEDEDEDEDEEDDEDEDDEEEDDTKTKKKLSAVKKSGKAQAGDGDGERPPECKQQ*

>Glyma.15g170700.2.p sequence-type=predicted peptide transcript=Glyma.15g170700.2 locus=Glyma.15g170700 ID=Glyma.15g170700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTNDNIAVTDLTSALNEENRADLVNALKSKIQSLAGAHSDVLETLSPNVRKRVESLREIQGKHDELEADFLKEREALEAKYQKLYQPLYTKRYEIVNGVTEVEGAANESTDESEENKEKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWSRIENPKGFKLDFFFDTNPYFSNTVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTESCESFFNFFKPPEVPEDDADIDEDLAEELQNQMEQDYDIGSTLRDKIIPHAVSWFTGEAAQGDEFEDLEDDEDEEEDEDEDEDEEDDEDEDDEEEDDTKTKKKKSGKAQAGDGDGERPPECKQQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo