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Report for Sequence Feature Glyma.15g165300

Feature Type:gene_model
Chromosome:Gm15
Start:14340459
stop:14344632
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g165300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13940.1AT DNA binding;DNA-directed RNA polymerases JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0006360GO-bp transcription by RNA polymerase I EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005736GO-cc DNA-directed RNA polymerase I complex EnsemblGenomesN/AIEA
GO:0001054GO-mf RNA polymerase I activity EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003899GO-mf DNA-directed 5'-3' RNA polymerase activity EnsemblGenomesN/AIEA
GO:0003899GO-mf DNA-directed RNA polymerase activity JGI N/AIEA
KOG4183 KOG RNA polymerase I 49 kDa subunit JGI N/AIEA
PTHR14440Panther FAMILY NOT NAMED JGI N/AIEA
PTHR14440:SF6Panther JGI N/AIEA
PF06870PFAM A49-like RNA polymerase I associated factor JGI N/AIEA

Expression Patterns of Glyma.15g165300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g165300 not represented in the dataset
Glyma.15g165300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.15g165300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g17850 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g165300
>Glyma.15g165300.2 sequence-type=transcript locus=Glyma.15g165300 ID=Glyma.15g165300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTGCGACTTAAAAAACACAGTTCAGCCCCTAGGGTTCAGTTGGGGTTTAGGGTTCTCTCATCACATCGGTGTTATCACTGTCACGGCGTGAGCTCATCTCATCGTTGAGTATAATAATGGATTCGGACACTGAAGAAACAAAACCCAAGCATCCCaagaaggagaagaaaaagaagaacaagaagaaAGAGGTTGAGGTCGAGGTTGTCCGTGAGCACCCCAATAAAACACCTCCTGTTGTTGGTTATTTCCCTTCCGGATTTGATCCGGTCAAGAATCATGGCGGCGGTCCCTCCAATTTTCAAGTTTACCGGCACAGGAGCATGCCCAAGAGGCTGGAGCTTGTGGTTCGCCCTCCCCGGTCTTCAGTGGAATTTGTTGGAACCAGTTATGCTGGCGAGGCTGCGGCCAGACACCGTGCCAAGTACGCACTTGGGGTTCTTGACAAGGAAGCCGGGACCCTGAAGGTTGTGCCCATTGCTGGTAATAAGATATTCAGATTGGAGCCGAAGGTTAAAGGCGTGGGAGCTTTTGAAAATGAGCCTGCAAATTCAACGTTGGAAGAGATGACTCAGCAGCAGAAGTTTGCGGAGACTACTTCTATATGGGGAACAAAGAAGGATATAGAGAAGGCTAAAAAGAAGCTAGCTCTCAGACAAGATGAAGATCCTGATTCTCAAAGGAATCTGGATGTGAAAATGAAAAGTGTTACAGTAAACAAAAAGGCTCTTGAAAGTACAGAATCTCATGTTTCTCGCAATATACCACCGTATGATGCTTCTGCAACTACACCTCAGGAGGCATATATATTGGACAAAATCATCCTTAAGGGAGAATGGGATTATCTTGAAGACATTTATAATAATTTGCAACGGGGAGAAGAAGCAGACTTCAGTGCTTATCCAACTTTTGTTCGCAACAGGATAGAAAGATTGAGGAAAATTAAGGATGAGTCAGAAAAGAAGCAGCTTTCCTGCATATTCTCATACATCAATCATCTTATAAAGTTCAAAGATCAGCATTCCTTTGATGTTTTGTCGGCAAAGGGCCATAAAATCCCCAACATTCTGCGTCATAAGTTTTCAAATATGTTTGCTGTTTCTGAATCAAAAAGGCTGCCCCCTGAAAAGATTAGTCTTCTCATTTGTTATGTGTTGGTGCTTACGCTTTTCTCTGATGAGTTCCGAACTGACTACACAGATATTGCAAAGGATCTGAGCATGAACATACTGCCCGTGAGACAACTCTATGAGCATTTGGGTTGCAAAATTTCCCGCCAGAAAAACATATTTTATGCCACACTTCCTGTCCCTCTTAAATTTCCTGAGTTGAGGCAGAGGAAGCGGAAAAGGTAGATAGATCACTATGTGAGTCCTTCTTTGGGGTCATCGACTGTTCTAAATCTTGTCTTCCAGTCTCGTTGGTGCAGTGATATCAAAAATTACTATCCAACACTTCCTATAGGTTGTTTGTTATTATTTTCTATCTGCATACATTTGAACATTGTTTGCTGTTTTAGTATTTTAAGAAGCGATTTTGAAATTAGCACACTCAATTTATTTTGATAGAAGATTTCCTTATTGCTGTTGAACGAACTGTTTAGAAGACTCTTTGGTGAAAAAAGAGTGTAGATTTATATAACACACAAAAAGCTGTTTGGATCCTTAATGCAGCTACGAATATCAGAAACATGCTTTTTTTACTAGCAAAAATGAAGTCTCAAAGATGTTATAGCCTCAACAATTAGACGGTAACCATCCAACAAGCTAAACCTGAATTCGTGCTTCCCACAATACAATCTCA
Coding sequences of Glyma.15g165300
>Glyma.15g165300.1 sequence-type=CDS polypeptide=Glyma.15g165300.1.p locus=Glyma.15g165300 ID=Glyma.15g165300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCGGACACTGAAGAAACAAAACCCAAGCATCCCAAGAAGGAGAAGAAAAAGAAGAACAAGAAGAAAGAGGTTGAGGTTGTCCAACCTCAATCTGAACAGATTGAGGTTGAGGTCGAGGTTGTCCGTGAGCACCCCAATAAAACACCTCCTGTTGTTGGTTATTTCCCTTCCGGATTTGATCCGGTCAAGAATCATGGCGGCGGTCCCTCCAATTTTCAAGTTTACCGGCACAGGAGCATGCCCAAGAGGCTGGAGCTTGTGGTTCGCCCTCCCCGGTCTTCAGTGGAATTTGTTGGAACCAGTTATGCTGGCGAGGCTGCGGCCAGACACCGTGCCAAGTACGCACTTGGGGTTCTTGACAAGGAAGCCGGGACCCTGAAGGTTGTGCCCATTGCTGGTAATAAGATATTCAGATTGGAGCCGAAGGTTAAAGGCGTGGGAGCTTTTGAAAATGAGCCTGCAAATTCAACGTTGGAAGAGATGACTCAGCAGCAGAAGTTTGCGGAGACTACTTCTATATGGGGAACAAAGAAGGATATAGAGAAGGCTAAAAAGAAGCTAGCTCTCAGACAAGATGAAGATCCTGATTCTCAAAGGAATCTGGATGTGAAAATGAAAAGTGTTACAGTAAACAAAAAGGCTCTTGAAAGTACAGAATCTCATGTTTCTCGCAATATACCACCGTATGATGCTTCTGCAACTACACCTCAGGAGGCATATATATTGGACAAAATCATCCTTAAGGGAGAATGGGATTATCTTGAAGACATTTATAATAATTTGCAACGGGGAGAAGAAGCAGACTTCAGTGCTTATCCAACTTTTGTTCGCAACAGGATAGAAAGATTGAGGAAAATTAAGGATGAGTCAGAAAAGAAGCAGCTTTCCTGCATATTCTCATACATCAATCATCTTATAAAGTTCAAAGATCAGCATTCCTTTGATGTTTTGTCGGCAAAGGGCCATAAAATCCCCAACATTCTGCGTCATAAGTTTTCAAATATGTTTGCTGTTTCTGAATCAAAAAGGCTGCCCCCTGAAAAGATTAGTCTTCTCATTTGTTATGTGTTGGTGCTTACGCTTTTCTCTGATGAGTTCCGAACTGACTACACAGATATTGCAAAGGATCTGAGCATGAACATACTGCCCGTGAGACAACTCTATGAGCATTTGGGTTGCAAAATTTCCCGCCAGAAAAACATATTTTATGCCACACTTCCTGTCCCTCTTAAATTTCCTGAGTTGAGGCAGAGGAAGCGGAAAAGGTAG

>Glyma.15g165300.2 sequence-type=CDS polypeptide=Glyma.15g165300.2.p locus=Glyma.15g165300 ID=Glyma.15g165300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCGGACACTGAAGAAACAAAACCCAAGCATCCCAAGAAGGAGAAGAAAAAGAAGAACAAGAAGAAAGAGGTTGAGGTCGAGGTTGTCCGTGAGCACCCCAATAAAACACCTCCTGTTGTTGGTTATTTCCCTTCCGGATTTGATCCGGTCAAGAATCATGGCGGCGGTCCCTCCAATTTTCAAGTTTACCGGCACAGGAGCATGCCCAAGAGGCTGGAGCTTGTGGTTCGCCCTCCCCGGTCTTCAGTGGAATTTGTTGGAACCAGTTATGCTGGCGAGGCTGCGGCCAGACACCGTGCCAAGTACGCACTTGGGGTTCTTGACAAGGAAGCCGGGACCCTGAAGGTTGTGCCCATTGCTGGTAATAAGATATTCAGATTGGAGCCGAAGGTTAAAGGCGTGGGAGCTTTTGAAAATGAGCCTGCAAATTCAACGTTGGAAGAGATGACTCAGCAGCAGAAGTTTGCGGAGACTACTTCTATATGGGGAACAAAGAAGGATATAGAGAAGGCTAAAAAGAAGCTAGCTCTCAGACAAGATGAAGATCCTGATTCTCAAAGGAATCTGGATGTGAAAATGAAAAGTGTTACAGTAAACAAAAAGGCTCTTGAAAGTACAGAATCTCATGTTTCTCGCAATATACCACCGTATGATGCTTCTGCAACTACACCTCAGGAGGCATATATATTGGACAAAATCATCCTTAAGGGAGAATGGGATTATCTTGAAGACATTTATAATAATTTGCAACGGGGAGAAGAAGCAGACTTCAGTGCTTATCCAACTTTTGTTCGCAACAGGATAGAAAGATTGAGGAAAATTAAGGATGAGTCAGAAAAGAAGCAGCTTTCCTGCATATTCTCATACATCAATCATCTTATAAAGTTCAAAGATCAGCATTCCTTTGATGTTTTGTCGGCAAAGGGCCATAAAATCCCCAACATTCTGCGTCATAAGTTTTCAAATATGTTTGCTGTTTCTGAATCAAAAAGGCTGCCCCCTGAAAAGATTAGTCTTCTCATTTGTTATGTGTTGGTGCTTACGCTTTTCTCTGATGAGTTCCGAACTGACTACACAGATATTGCAAAGGATCTGAGCATGAACATACTGCCCGTGAGACAACTCTATGAGCATTTGGGTTGCAAAATTTCCCGCCAGAAAAACATATTTTATGCCACACTTCCTGTCCCTCTTAAATTTCCTGAGTTGAGGCAGAGGAAGCGGAAAAGGTAG
Predicted protein sequences of Glyma.15g165300
>Glyma.15g165300.1.p sequence-type=predicted peptide transcript=Glyma.15g165300.1 locus=Glyma.15g165300 ID=Glyma.15g165300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSDTEETKPKHPKKEKKKKNKKKEVEVVQPQSEQIEVEVEVVREHPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVVRPPRSSVEFVGTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFENEPANSTLEEMTQQQKFAETTSIWGTKKDIEKAKKKLALRQDEDPDSQRNLDVKMKSVTVNKKALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEEADFSAYPTFVRNRIERLRKIKDESEKKQLSCIFSYINHLIKFKDQHSFDVLSAKGHKIPNILRHKFSNMFAVSESKRLPPEKISLLICYVLVLTLFSDEFRTDYTDIAKDLSMNILPVRQLYEHLGCKISRQKNIFYATLPVPLKFPELRQRKRKR*

>Glyma.15g165300.2.p sequence-type=predicted peptide transcript=Glyma.15g165300.2 locus=Glyma.15g165300 ID=Glyma.15g165300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSDTEETKPKHPKKEKKKKNKKKEVEVEVVREHPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVVRPPRSSVEFVGTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFENEPANSTLEEMTQQQKFAETTSIWGTKKDIEKAKKKLALRQDEDPDSQRNLDVKMKSVTVNKKALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEEADFSAYPTFVRNRIERLRKIKDESEKKQLSCIFSYINHLIKFKDQHSFDVLSAKGHKIPNILRHKFSNMFAVSESKRLPPEKISLLICYVLVLTLFSDEFRTDYTDIAKDLSMNILPVRQLYEHLGCKISRQKNIFYATLPVPLKFPELRQRKRKR*






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