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Report for Sequence Feature Glyma.15g162900

Feature Type:gene_model
Chromosome:Gm15
Start:13969533
stop:13974469
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g162900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25800.1AT Protein of unknown function (DUF810) JGI N/AIEA
PF05664PFAM Protein of unknown function (DUF810) JGI N/AIEA

Expression Patterns of Glyma.15g162900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g162900 not represented in the dataset
Glyma.15g162900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.15g162900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g17565 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g162900
>Glyma.15g162900.2 sequence-type=transcript locus=Glyma.15g162900 ID=Glyma.15g162900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ctggctgtctcgctctcttctttctctctctcGCAACAATAACTCATCTCTTCAGAGACCTCTCATTGGGCCACTCCAAGAGAGACTCCACGCCGCCGCTGATAATGCCTCCCAAGCTCGCTGCCGTCACCGCCGCCGACGACCTTCCCTCTTCGTTCGGCCAGCTCGCCGCCTCTCTCTCCGATTCTGACTTTGCACTAACCGCCTACGAGATCTTCCTCGCCGCGTGCCGCACCTCCTCCGGCAAGCCTCTCAGTTTCGCTGCCAACCACTCCTCCACTATCGCCAGCAAGGTCAAGAAGGCCTTTGGCCTTAAATCGCCAGGTTTGGCCTCCAGAAAGAGCCCTGGCTCTGCTTCGGGCCAAGGAAAGCCGAAACGGCCTCTCATCGTCGGCGAGCTGATGCGCAACCAGATGAAGGTTTCCGAAGCCATGGATTCGCACGTGCGACGCGTGCTGCTCAGGATTTCCGCTGGCCAGGGAATACCATCTGTTAGTAAAACACTGGAGGATTCTGATTAATGGGTTACTGCACTCTGTAAGAATCTGACTACTTGGTGGCCATGGGCCCTCGTTCAGGATAAAAATCTTACAATTTGTCATGGAGGGCGAGCCCTAGTGCAGCGGTAAagttgtgccttggtgacttgttggtcatgggttcgaatccggaaacagcctctttgcatctgcaaggCATGTTGGATATTTTTCTATGCAATTGGACGAATTTCTTTCAAAACAGTGCAGAACTCTGAAAGTGTTACTTCATGCTCAAAATAAGTGCCAGGTTTCACAGCCAAGATGAACTTGAGTGATGACGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGTGCTGATTTTTGTGCCCAATAATTTTCTTGTCCTATATATCTCATTCTATTTATTTGTACTTTTTTTTTACTAAGAATCCAAAAAAATACTTCTTATTGTTTATATAACATGCTTACATACTCAAAAATACTTTTCTCCTCAATTTTACAATTGTATTTGCGGTTCCTATTAGTTTTTTCTTAGG

>Glyma.15g162900.3 sequence-type=transcript locus=Glyma.15g162900 ID=Glyma.15g162900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ctggctgtctcgctctcttctttctctctctcGCAACAATAACTCATCTCTTCAGAGACCTCTCATTGGGCCACTCCAAGAGAGACTCCACGCCGCCGCTGATAATGCCTCCCAAGCTCGCTGCCGTCACCGCCGCCGACGACCTTCCCTCTTCGTTCGGCCAGCTCGCCGCCTCTCTCTCCGATTCTGACTTTGCACTAACCGCCTACGAGATCTTCCTCGCCGCGTGCCGCACCTCCTCCGGCAAGCCTCTCAGTTTCGCTGCCAACCACTCCTCCACTATCGCCAGCAAGGTCAAGAAGGCCTTTGGCCTTAAATCGCCAGGTTTGGCCTCCAGAAAGAGCCCTGGCTCTGCTTCGGGCCAAGGAAAGCCGAAACGGCCTCTCATCGTCGGCGAGCTGATGCGCAACCAGATGAAGGTTTCCGAAGCCATGGATTCGCACGTGCGACGCGTGCTGCTCAGGATTTCCGCTGGCCAGGGAATACCATCTGTTAGTAAAACACTGGAGGATTCTGATTAATGGGTTACTGCACTCTGTAAGAATCTGACTACTTGGTGGCCATGGGCCCTCGTTCAGGATAAAAATCTTACAATTTGTCATGGAGGGCGAGCCCTAGTGCAGCGGTAAagttgtgccttggtgacttgttggtcatgggttcgaatccggaaacagcctctttgcatctgcaaggTCATGTGATGACTGATGACGTGACCAGCTTGTGGAATATCTTATTAAAAACAGCATGTTGGATATTTTTCTATGCAATTGGACGAATTTCTTTCAAAACAGTGCAGAACTCTGAAAGTGTTACTTCATGCTCAAAATAAGTGCCAGGTTTCACAGCCAAGATGAACTTGAGTGATGACGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGTGCTGATTTTTGTGCCCAATAATTTTCTTGTCCTATATATCTCATTCTATTTATTTGTACTTTTTTTTTACTAAGAATCCAAAAAAATACTTCTTATTGTTTATATAACATGCTTACATACTCAAAAATACTTTTCTCCTCAATTTTACAATTGTATTTGCGGTTCCTATTAGTTTTTTCTTAGG
Coding sequences of Glyma.15g162900
>Glyma.15g162900.1 sequence-type=CDS polypeptide=Glyma.15g162900.1.p locus=Glyma.15g162900 ID=Glyma.15g162900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCTCTCGCTACCTGGCTGTCTCGCTCTCTTCTTTCTCTCTCTCGCAACAATAACTCATCTCTTCAGAGACCTCTCATTGGGCCACTCCAAGAGAGACTCCACGCCGCCGCTGATAATGCCTCCCAAGCTCGCTGCCGTCACCGCCGCCGACGACCTTCCCTCTTCGTTCGGCCAGCTCGCCGCCTCTCTCTCCGATTCTGACTTTGCACTAACCGCCTACGAGATCTTCCTCGCCGCGTGCCGCACCTCCTCCGGCAAGCCTCTCAGTTTCGCTGCCAACCACTCCTCCACTATCGCCAGCAAGGTCAAGAAGGCCTTTGGCCTTAAATCGCCAGGTTTGGCCTCCAGAAAGAGCCCTGGCTCTGCTTCGGGCCAAGGAAAGCCGAAACGGCCTCTCATCGTCGGCGAGCTGATGCGCAACCAGATGAAGGTTTCCGAAGCCATGGATTCGCACGTGCGACGCGTGCTGCTCAGGATTTCCGCTGGCCAGGGAATACCATCTGTTAGTAAAACACTGGAGGATTCTGATTAA

>Glyma.15g162900.2 sequence-type=CDS polypeptide=Glyma.15g162900.2.p locus=Glyma.15g162900 ID=Glyma.15g162900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTCCCAAGCTCGCTGCCGTCACCGCCGCCGACGACCTTCCCTCTTCGTTCGGCCAGCTCGCCGCCTCTCTCTCCGATTCTGACTTTGCACTAACCGCCTACGAGATCTTCCTCGCCGCGTGCCGCACCTCCTCCGGCAAGCCTCTCAGTTTCGCTGCCAACCACTCCTCCACTATCGCCAGCAAGGTCAAGAAGGCCTTTGGCCTTAAATCGCCAGGTTTGGCCTCCAGAAAGAGCCCTGGCTCTGCTTCGGGCCAAGGAAAGCCGAAACGGCCTCTCATCGTCGGCGAGCTGATGCGCAACCAGATGAAGGTTTCCGAAGCCATGGATTCGCACGTGCGACGCGTGCTGCTCAGGATTTCCGCTGGCCAGGGAATACCATCTGTTAGTAAAACACTGGAGGATTCTGATTAA

>Glyma.15g162900.3 sequence-type=CDS polypeptide=Glyma.15g162900.3.p locus=Glyma.15g162900 ID=Glyma.15g162900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTCCCAAGCTCGCTGCCGTCACCGCCGCCGACGACCTTCCCTCTTCGTTCGGCCAGCTCGCCGCCTCTCTCTCCGATTCTGACTTTGCACTAACCGCCTACGAGATCTTCCTCGCCGCGTGCCGCACCTCCTCCGGCAAGCCTCTCAGTTTCGCTGCCAACCACTCCTCCACTATCGCCAGCAAGGTCAAGAAGGCCTTTGGCCTTAAATCGCCAGGTTTGGCCTCCAGAAAGAGCCCTGGCTCTGCTTCGGGCCAAGGAAAGCCGAAACGGCCTCTCATCGTCGGCGAGCTGATGCGCAACCAGATGAAGGTTTCCGAAGCCATGGATTCGCACGTGCGACGCGTGCTGCTCAGGATTTCCGCTGGCCAGGGAATACCATCTGTTAGTAAAACACTGGAGGATTCTGATTAA
Predicted protein sequences of Glyma.15g162900
>Glyma.15g162900.1.p sequence-type=predicted peptide transcript=Glyma.15g162900.1 locus=Glyma.15g162900 ID=Glyma.15g162900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWLSLPGCLALFFLSLATITHLFRDLSLGHSKRDSTPPLIMPPKLAAVTAADDLPSSFGQLAASLSDSDFALTAYEIFLAACRTSSGKPLSFAANHSSTIASKVKKAFGLKSPGLASRKSPGSASGQGKPKRPLIVGELMRNQMKVSEAMDSHVRRVLLRISAGQGIPSVSKTLEDSD*

>Glyma.15g162900.2.p sequence-type=predicted peptide transcript=Glyma.15g162900.2 locus=Glyma.15g162900 ID=Glyma.15g162900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPPKLAAVTAADDLPSSFGQLAASLSDSDFALTAYEIFLAACRTSSGKPLSFAANHSSTIASKVKKAFGLKSPGLASRKSPGSASGQGKPKRPLIVGELMRNQMKVSEAMDSHVRRVLLRISAGQGIPSVSKTLEDSD*

>Glyma.15g162900.3.p sequence-type=predicted peptide transcript=Glyma.15g162900.3 locus=Glyma.15g162900 ID=Glyma.15g162900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPPKLAAVTAADDLPSSFGQLAASLSDSDFALTAYEIFLAACRTSSGKPLSFAANHSSTIASKVKKAFGLKSPGLASRKSPGSASGQGKPKRPLIVGELMRNQMKVSEAMDSHVRRVLLRISAGQGIPSVSKTLEDSD*






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