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Report for Sequence Feature Glyma.15g153900

Feature Type:gene_model
Chromosome:Gm15
Start:12772133
stop:12772959
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g153900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47810.1AT nuclear factor Y, subunit B5 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
GO:0046982GO-mf protein heterodimerization activity EnsemblGenomesN/AIEA
KOG0869 KOG CCAAT-binding factor, subunit A (HAP3) JGI N/AIEA
PTHR11064Panther CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED JGI N/AIEA
PTHR11064:SF9Panther NUCLEAR FACTOR Y-BOX B JGI N/AIEA
PF00808PFAM Histone-like transcription factor (CBF/NF-Y) and archaeal histone JGI N/AIEA

Expression Patterns of Glyma.15g153900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g153900
ParalogEvidenceComments
Glyma.09g046200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g153900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g16460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g153900
>Glyma.15g153900.1 sequence-type=CDS polypeptide=Glyma.15g153900.1.p locus=Glyma.15g153900 ID=Glyma.15g153900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGATATTGGAGGCAGTTCCTCAAACGACAACAACAACAATGGTGGCATCATCAAGGAACAGGACCGGTTGCTGCCAATAGCCAATGTTGGTCGGCTCATGAAGCGGATTCTTCCTCAGAACGCCAAAATCTCGAAGGAGGCGAAGGAGACGATGCAGGAATGTGTGTCGGAGTTCATAAGCTTCGTGACGAGTGAGGCTTCGGAGAAGTGCAGGAAGGAGAGGAGGAAGACAGTGAATGGTGATGACATTTGTTGGGCCTTGGCAACACTAGGCTTTGATAACTATGCTGAACCAATGAGAAGGTACTTGCATAGATATAGAGAGGTTGAGGTAGATCATAATAAGGTCAATCTTCAAGAAAAAGGGAATAGTCCTGAAGAGAAGGACGATGAATTATTTAAATTGAGCAATAGAGGGGTTGGGCTTTGA
Predicted protein sequences of Glyma.15g153900
>Glyma.15g153900.1.p sequence-type=predicted peptide transcript=Glyma.15g153900.1 locus=Glyma.15g153900 ID=Glyma.15g153900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDIGGSSSNDNNNNGGIIKEQDRLLPIANVGRLMKRILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDNYAEPMRRYLHRYREVEVDHNKVNLQEKGNSPEEKDDELFKLSNRGVGL*






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