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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16143.1 | AT | importin alpha isoform 2 | JGI | N/A | IEA |
| GO:0006606 | GO-bp | protein import into nucleus | EnsemblGenomes | N/A | IEA |
| GO:0006606 | GO-bp | protein import into nucleus | JGI | N/A | IEA |
| GO:0006607 | GO-bp | NLS-bearing protein import into nucleus | EnsemblGenomes | N/A | IEA |
| GO:0006810 | GO-bp | transport | EnsemblGenomes | N/A | IEA |
| GO:0015031 | GO-bp | protein transport | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | JGI | N/A | IEA |
| GO:0005643 | GO-cc | nuclear pore | EnsemblGenomes | N/A | IEA |
| GO:0005654 | GO-cc | nucleoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0005488 | GO-mf | binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0008139 | GO-mf | nuclear localization sequence binding | EnsemblGenomes | N/A | IEA |
| GO:0008565 | GO-mf | protein transporter activity | EnsemblGenomes | N/A | IEA |
| GO:0008565 | GO-mf | protein transporter activity | JGI | N/A | IEA |
| GO:0061608 | GO-mf | nuclear import signal receptor activity | EnsemblGenomes | N/A | IEA |
| KOG0166 | KOG | Karyopherin (importin) alpha | JGI | N/A | IEA |
| PTHR23316 | Panther | IMPORTIN ALPHA | JGI | N/A | IEA |
| PF00514 | PFAM | Armadillo/beta-catenin-like repeat | JGI | N/A | IEA |
| PF01749 | PFAM | Importin beta binding domain | JGI | N/A | IEA |
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Glyma.15g144800 not represented in the dataset |
Glyma.15g144800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g039600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g15480 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g144800.1 sequence-type=CDS polypeptide=Glyma.15g144800.1.p locus=Glyma.15g144800 ID=Glyma.15g144800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCGCTGAGGCCGAATGCTAGAACCGAGGTTCGCCGCAACCGCTACAAGGTGGCGGTGGACGCCGACGAGGGTCGCCGGCGGAGGGAGGACAACATGGTTGAGATCCGCAAGAGCAAGCGCGAAGAGAGCCTCCAGAAGAAGCGCCGCGAAGGCCTCCAAGCTCAGCAGCAGTTCCCCACTCCTCTCCAAGCCTCCTCCATTGTCGAGAAAAAGTTAGAGAGTCTTCCTGCGATGGTAGCTGGAGTGTGGTCGGATGATAACAGCCAGCAATTGGAAGCGACCACGCAGTTCCGGAAACTGCTTTCGATTGAGCGCAGTCCTCCGATTGAGGAAGTTATTCAAGCTGGGGTTGTGCCTCGGTTTGTGGAGTTTCTTGTTAGGGAGGATTTTCCTCAACTACAGTTTGAGGCTGCGTGGGCTCTCACGAACATTGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCGGTGCCGATATTTGTCAAACTACTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGGCAGTATGGGCGTTGGGAAATGTTGCTGGTGACTCCCCAAGGTGTCGTGATCTTGTTCTTAGTCACGGTGCCCTGATCCCATTGTTGGCCCAGTTGAATGAGCATGCAAAACTTTCCATGTTGAGAAACGCCACATGGACCCTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCATTTGAGCAGGTGAGGGCAGCGCTTCCTGCTCTAGAACGATTGGTTTTTTCCAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCGCTATCATATCTTTCCGATGGAACAAATGACAAAATCCAAGCCGTTATTGAGGCTGGTGTTTGTCCCAGACTGGTGCAGCTCCTTCTGCACCCATCCCCTTCAGTGCTGATTCCTGCTCTTCGCACAGTTGGAAATATTGTGACGGGAGATGATATGCAGACTCAGACTATCATCAATCATGGTGCGCTCCCATGCCTCTTGAGCCTGTTGACACACAATCATAAAAAAAGTATCAAGAAAGAAGCATGCTGGACCATATCAAACATTACGGCTGGAAACAGAGATCAGATACAGGCTGTTATTGAAGCTGGTCTGATTGCCCCCCTTGTCAATCTTCTTCAAAATGCTGAATTTGACATAAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGCGGTACCCATGAGCAGATCAAGTATTTGGTGAGCCAGGGTTGCATCAAGCCTCTCTGTGATCTGCTTGTTTGCCCCGACCCAAGAATTGTCACTGTCTGTTTAGAAGGTCTTGAGAATATTCTGAAGGTTGGGGAAGCTGAGAAGAGCTTGGGTAATACTGGAGATGTCAACTTGTATGCTCAGATGATAGACGAAGCAGAGGGATTAGAGAAAATTGAAAACCTGCAGAGTCATGACAACAATGAAATATATGAAAAGGCTGTTAAAATTCTTGAGACATACTGGTTGGAAGACGATGATGAGACACTACCTGCAGGCGATGGTGCTCAACCCGGTTTTAATTTTGGAAACAATGATCTTCCGGTTCCATCTGGTGGATTCAACTTTAGTTGA
>Glyma.15g144800.1.p sequence-type=predicted peptide transcript=Glyma.15g144800.1 locus=Glyma.15g144800 ID=Glyma.15g144800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFPTPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDDETLPAGDGAQPGFNFGNNDLPVPSGGFNFS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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