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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49330.1 | AT | myb domain protein 111 | JGI | N/A | IEA |
| GO:0006357 | GO-bp | regulation of transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0030154 | GO-bp | cell differentiation | EnsemblGenomes | N/A | IEA |
| GO:0045893 | GO-bp | positive regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0000981 | GO-mf | RNA polymerase II transcription factor activity, sequence-specific DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0001135 | GO-mf | transcription factor activity, RNA polymerase II transcription factor recruiting | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003682 | GO-mf | chromatin binding | JGI | N/A | IEA |
| GO:0043565 | GO-mf | sequence-specific DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0044212 | GO-mf | transcription regulatory region DNA binding | EnsemblGenomes | N/A | IEA |
| KOG0048 | KOG | Transcription factor, Myb superfamily | JGI | N/A | IEA |
| PTHR10641 | Panther | MYB-LIKE DNA-BINDING PROTEIN MYB | JGI | N/A | IEA |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | N/A | IEA |
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Glyma.15g144000 not represented in the dataset |
Glyma.15g144000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g038900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g15400 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g144000.1 sequence-type=CDS polypeptide=Glyma.15g144000.1.p locus=Glyma.15g144000 ID=Glyma.15g144000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTAGATCTCCTTGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCAGAAGAGGATAAAATCTTGACCGATTACATTCAAGAAAATGGTGAAGGCTCGTGGAAAACCTTGCCTAAGAATGCAGGTTTGTTGAGGTGTGGGAAGAGTTGCCGACTGAGATGGATCAACTATTTGAGAGCTGACGTGAAGAGAGGTAACATCACTCCTGAGGAAGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCTGTGATAGCTGGACGTTTACCGGGACGAACAGACAATGAGATAAAGAACTATTGGAACTCTCACCTTAGGAGAAAGATCTATTGCTTCATGAGATCTCTAAATGAGTCTCTTCCACCCACTGACATGGCTGCTGTAAACTCTGCCACATCCAAGAGAAGAGTTCGCGGTTCAAGAAACAAGCCAGCCACAGAAGAAGAAAAGAACATGGCTTTGAGCCAAAACTCCTTTGAGTCAATGCCTAGTTGCAACAGAGAAGAAGGTGAAGAAATTTCCATGATGGATGCTTGTTATGAAATGGAGAGCATTACAATTAGTAGCACATTTGCATCATGCCCCAGCCTTGAAGCCAGCTTGGGACCATATCATCATTGGTCTGATGATGAAATCATGAAACTTAGTAACATGTTTGAAAATGGGGTGCTTGTGAATCCAAGTGGTAATAATGTAACCCTTAAGGATGAGCCTAATGGAATTGAATGTGGCCAGATGAATGTGGATATAATGGGAACAGATCAAAGCAAGAATAATGCATCAAATGGGGATAGTGGAGAATGGTACCCCAATTGTTCATCAGTGAATTCTGCTATTGATTATCAGTGGTCTGATTGGGACATGGGAGGAAGTGTTCAATCCAATAATCAGTGGAACCTTTGTGATGACCAAGTGATGAATTGCTTGTGGAGTACTGGCATTGGTGAAATAAATTATGGTTTTCATCCATAA
>Glyma.15g144000.1.p sequence-type=predicted peptide transcript=Glyma.15g144000.1 locus=Glyma.15g144000 ID=Glyma.15g144000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGRSPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWKTLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEEIIVKLHAVLGNRWSVIAGRLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESLPPTDMAAVNSATSKRRVRGSRNKPATEEEKNMALSQNSFESMPSCNREEGEEISMMDACYEMESITISSTFASCPSLEASLGPYHHWSDDEIMKLSNMFENGVLVNPSGNNVTLKDEPNGIECGQMNVDIMGTDQSKNNASNGDSGEWYPNCSSVNSAIDYQWSDWDMGGSVQSNNQWNLCDDQVMNCLWSTGIGEINYGFHP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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