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Report for Sequence Feature Glyma.15g135100

Feature Type:gene_model
Chromosome:Gm15
Start:10845919
stop:10851256
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g135100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G49950.1AT telomere repeat binding factor 1 JGI N/AIEA
GO:0006334GO-bp nucleosome assembly EnsemblGenomesN/AIEA
GO:0006334GO-bp nucleosome assembly JGI N/AIEA
GO:0000786GO-cc nucleosome EnsemblGenomesN/AIEA
GO:0000786GO-cc nucleosome JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005694GO-cc chromosome EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003682GO-mf chromatin binding JGI N/AIEA
PTHR21717Panther TELOMERIC REPEAT BINDING PROTEIN JGI N/AIEA
PF00249PFAM Myb-like DNA-binding domain JGI N/AIEA
PF00538PFAM linker histone H1 and H5 family JGI N/AIEA

Expression Patterns of Glyma.15g135100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g135100 not represented in the dataset
Glyma.15g135100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g135100
ParalogEvidenceComments
Glyma.09g029300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g135100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g14320 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g135100
>Glyma.15g135100.2 sequence-type=transcript locus=Glyma.15g135100 ID=Glyma.15g135100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACATGCTGTTGGGTCTCTGGTCCGGTTAGGGCATTTGGCGCGGGATGCAAACAAATCTGGGACCTTAAATCAccaatccaatcccaatcaattcattttcctccaattccaattAAGCTGAGAGTGTTTTTGATCTACACGCGATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAACAAGCACTTAAAGCTGGAGTTGTCAAGCACGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAGTGGTGTCTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTATCAGTCAGAAGGGTGCATCAGGTCCCGAGACAGGATGAGAACTCCATGGCTATCACTCCTGTTGTTCCAAGTGACGAAGAGATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATTGTGCATATTCCTGGTCCAAAGAGGTCTAATTTAAGTTTGGATAAGCTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTTATAGAGGTAAATCGCAAGTATAGAATTGCACCTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGCTATATTTGAAAGGGAGGCAGAAAGCCTCTATGAAAATTGACAGGGATGAGACCAACATCCTTACTAGATCTCAGATAGATTTAGAGTTAGAAAAGATAAGGTCTATGACTCCACAAGAGGCAGCTGCATTTGCTGCCCGAGCAGTTGCTGAAGCAGAAGCCGCCATTGCAGAAGCAGAGGAGGCAGCAAAGGAGGCTGAGGCAGCAGAAGCTGATGCGGAGGCTGCACAAGCTTTTGCAGATGCTACAACGAAATCAGCGAAAGGGAGAAAATCCCCAAAGAGGATCCATACTTAATGGAAGTTTGAAGAATTAGACATGAGGAGAGATGAACCATGGCATTGAGTAGGACAGCCAGCCAGCTAAATATCATTTGCTGGCATTGTCTATATATTTTGCATATAATATTGGAGGCTCTTGTGACTATGCTGGTTTCACCTTTATTAGGAGATTAATTCTATATTTTTGGATCTTGGAATATCCTTCTTGTAGATAGAACCATTGTTTGAATCTTTATTGTAATTTCTTTAGTGCTGTCGTTACCTTAGCACTCTGTCCATGTACTTTGTTTATAGAAAGTAGATGTTTAGATGAATGGGAATTCGTTCAAATTCCTTCTG

>Glyma.15g135100.3 sequence-type=transcript locus=Glyma.15g135100 ID=Glyma.15g135100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACATGCTGTTGGGTCTCTGGTCCGGTTAGGGCATTTGGCGCGGGATGCAAACAAATCTGGGACCTTAAATCAccaatccaatcccaatcaattcattttcctccaattccaattAAGCTGAGAGTGTTTTTGATCTACACGCGATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAACAAGCACTTAAAGCTGGAGTTGTCAAGCACGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAGTGGTGTCTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTATCAGTCAGAAGGGTGCATCAGGTCCCGAGACAGGATGAGAACTCCATGGCTATCACTCCTGTTGTTCCAAGTGACGAAGAGATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATTGTGCATATTCCTGGTCCAAAGAGTTTGGATAAGCTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTTATAGAGGACCAATATTGGGCACTGCCAGGCTTAAAAAGTATGTTGTCTGCAAAATTAAAGTTTTTGACAGCAAGTGGAAAACTGATCAAGGTAAATCGCAAGTATAGAATTGCACCTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGCTATATTTGAAAGGGAGGCAGAAAGCCTCTATGAAAATTGACAGGGATGAGACCAACATCCTTACTAGATCTCAGATAGATTTAGAGTTAGAAAAGATAAGGTCTATGACTCCACAAGAGGCAGCTGCATTTGCTGCCCGAGCAGTTGCTGAAGCAGAAGCCGCCATTGCAGAAGCAGAGGAGGCAGCAAAGGAGGCTGAGGCAGCAGAAGCTGATGCGGAGGCTGCACAAGCTTTTGCAGATGCTACAACGAAATCAGCGAAAGGGAGAAAATCCCCAAAGAGGATCCATACTTAATGGAAGTTTGAAGAATTAGACATGAGGAGAGATGAACCATGGCATTGAGTAGGACAGCCAGCCAGCTAAATATCATTTGCTGGCATTGTCTATATATTTTGCATATAATATTGGAGGCTCTTGTGACTATGCTGGTTTCACCTTTATTAGGAGATTAATTCTATATTTTTGGATCTTGGAATATCCTTCTTGTAGATAGAACCATTGTTTGAATCTTTATTGTAATTTCTTTAGTGCTGTCGTTACCTTAGCACTCTGTCCATGTACTTTGTTTATAGAAAGTAGATGTTTAGATGAATGGGAATTCGTTCAAATTCCTTCTG

>Glyma.15g135100.4 sequence-type=transcript locus=Glyma.15g135100 ID=Glyma.15g135100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTTCCTCTTTTTCGTTCTCTCTCTCTCTTTTCTCACTATTTCCTCGCCGATATCTCACAAATTCCGCTCTTAGGGTTTCGTAGAACAAACCAAAATTCAATTGTTTTAGCTGAGAGTGTTTTTGATCTACACGCGATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAACAAGCACTTAAAGCTGGAGTTGTCAAGCACGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAGTGGTGTCTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTATCAGTCAGAAGGGTGCATCAGGTCCCGAGACAGGATGAGAACTCCATGGCTATCACTCCTGTTGTTCCAAGTGACGAAGAGATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATTGTGCATATTCCTGGTCCAAAGAGGTCTAATTTAAGTTTGGATAAGCTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTTATAGAGGACCAATATTGGGCACTGCCAGGCTTAAAAAGTATGTTGTCTGCAAAATTAAAGTTTTTGACAGCAAGTGGAAAACTGATCAAGGTAAATCGCAAGTATAGAATTGCACCTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGCTATATTTGAAAGGGAGGCAGAAAGCCTCTATGAAAATTGACAGGGATGAGACCAACATCCTTACTAGATCTCAGATAGATTTAGAGTTAGAAAAGATAAGGTCTATGACTCCACAAGAGGCAGCTGCATTTGCTGCCCGAGCAGTTGCTGAAGCAGAAGCCGCCATTGCAGAAGCAGAGGAGGCAGCAAAGGAGGCTGAGGCAGCAGAAGCTGATGCGGAGGCTGCACAAGCTTTTGCAGATGCTACAACGAAATCAGCGAAAGGGAGAAAATCCCCAAAGAGGATCCATACTTAATGGAAGTTTGAAGAATTAGACATGAGGAGAGATGAACCATGGCATTGAGTAGGACAGCCAGCCAGCTAAATATCATTTGCTGGCATTGTCTATATATTTTGCATATAATATTGGAGGCTCTTGTGACTATGCTGGTTTCACCTTTATTAGGAGATTAATTCTATATTTTTGGATCTTGGAATATCCTTCTTGTAGATAGAACCATTGTTTGAATCTTTATTGTAATTTCTTTAGTGCTGTCGTTACCTTAGCACTCTGTCCATGTACTTTGTTTATAGAAAGTAGATGTTTAGATGAATGGGAATTCGTTCAAATTCCTTCTGAA
Coding sequences of Glyma.15g135100
>Glyma.15g135100.1 sequence-type=CDS polypeptide=Glyma.15g135100.1.p locus=Glyma.15g135100 ID=Glyma.15g135100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAACAAGCACTTAAAGCTGGAGTTGTCAAGCACGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAGTGGTGTCTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTATCAGTCAGAAGGGTGCATCAGGTCCCGAGACAGGATGAGAACTCCATGGCTATCACTCCTGTTGTTCCAAGTGACGAAGAGATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATTGTGCATATTCCTGGTCCAAAGAGGTCTAATTTAAGTTTGGATAAGCTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTTATAGAGGACCAATATTGGGCACTGCCAGGCTTAAAAAGTATGTTGTCTGCAAAATTAAAGTTTTTGACAGCAAGTGGAAAACTGATCAAGGTAAATCGCAAGTATAGAATTGCACCTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGCTATATTTGAAAGGGAGGCAGAAAGCCTCTATGAAAATTGACAGGGATGAGACCAACATCCTTACTAGATCTCAGATAGATTTAGAGTTAGAAAAGATAAGGTCTATGACTCCACAAGAGGCAGCTGCATTTGCTGCCCGAGCAGTTGCTGAAGCAGAAGCCGCCATTGCAGAAGCAGAGGAGGCAGCAAAGGAGGCTGAGGCAGCAGAAGCTGATGCGGAGGCTGCACAAGCTTTTGCAGATGCTACAACGAAATCAGCGAAAGGGAGAAAATCCCCAAAGAGGATCCATACTTAA

>Glyma.15g135100.2 sequence-type=CDS polypeptide=Glyma.15g135100.2.p locus=Glyma.15g135100 ID=Glyma.15g135100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAACAAGCACTTAAAGCTGGAGTTGTCAAGCACGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAGTGGTGTCTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTATCAGTCAGAAGGGTGCATCAGGTCCCGAGACAGGATGAGAACTCCATGGCTATCACTCCTGTTGTTCCAAGTGACGAAGAGATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATTGTGCATATTCCTGGTCCAAAGAGGTCTAATTTAAGTTTGGATAAGCTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTTATAGAGGTAAATCGCAAGTATAGAATTGCACCTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGCTATATTTGAAAGGGAGGCAGAAAGCCTCTATGAAAATTGACAGGGATGAGACCAACATCCTTACTAGATCTCAGATAGATTTAGAGTTAGAAAAGATAAGGTCTATGACTCCACAAGAGGCAGCTGCATTTGCTGCCCGAGCAGTTGCTGAAGCAGAAGCCGCCATTGCAGAAGCAGAGGAGGCAGCAAAGGAGGCTGAGGCAGCAGAAGCTGATGCGGAGGCTGCACAAGCTTTTGCAGATGCTACAACGAAATCAGCGAAAGGGAGAAAATCCCCAAAGAGGATCCATACTTAA

>Glyma.15g135100.3 sequence-type=CDS polypeptide=Glyma.15g135100.3.p locus=Glyma.15g135100 ID=Glyma.15g135100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAACAAGCACTTAAAGCTGGAGTTGTCAAGCACGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAGTGGTGTCTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTATCAGTCAGAAGGGTGCATCAGGTCCCGAGACAGGATGAGAACTCCATGGCTATCACTCCTGTTGTTCCAAGTGACGAAGAGATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATTGTGCATATTCCTGGTCCAAAGAGTTTGGATAAGCTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTTATAGAGGACCAATATTGGGCACTGCCAGGCTTAAAAAGTATGTTGTCTGCAAAATTAAAGTTTTTGACAGCAAGTGGAAAACTGATCAAGGTAAATCGCAAGTATAGAATTGCACCTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGCTATATTTGAAAGGGAGGCAGAAAGCCTCTATGAAAATTGACAGGGATGAGACCAACATCCTTACTAGATCTCAGATAGATTTAGAGTTAGAAAAGATAAGGTCTATGACTCCACAAGAGGCAGCTGCATTTGCTGCCCGAGCAGTTGCTGAAGCAGAAGCCGCCATTGCAGAAGCAGAGGAGGCAGCAAAGGAGGCTGAGGCAGCAGAAGCTGATGCGGAGGCTGCACAAGCTTTTGCAGATGCTACAACGAAATCAGCGAAAGGGAGAAAATCCCCAAAGAGGATCCATACTTAA

>Glyma.15g135100.4 sequence-type=CDS polypeptide=Glyma.15g135100.4.p locus=Glyma.15g135100 ID=Glyma.15g135100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAACAAGCACTTAAAGCTGGAGTTGTCAAGCACGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAGTGGTGTCTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTATCAGTCAGAAGGGTGCATCAGGTCCCGAGACAGGATGAGAACTCCATGGCTATCACTCCTGTTGTTCCAAGTGACGAAGAGATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATTGTGCATATTCCTGGTCCAAAGAGGTCTAATTTAAGTTTGGATAAGCTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTTATAGAGGACCAATATTGGGCACTGCCAGGCTTAAAAAGTATGTTGTCTGCAAAATTAAAGTTTTTGACAGCAAGTGGAAAACTGATCAAGGTAAATCGCAAGTATAGAATTGCACCTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGCTATATTTGAAAGGGAGGCAGAAAGCCTCTATGAAAATTGACAGGGATGAGACCAACATCCTTACTAGATCTCAGATAGATTTAGAGTTAGAAAAGATAAGGTCTATGACTCCACAAGAGGCAGCTGCATTTGCTGCCCGAGCAGTTGCTGAAGCAGAAGCCGCCATTGCAGAAGCAGAGGAGGCAGCAAAGGAGGCTGAGGCAGCAGAAGCTGATGCGGAGGCTGCACAAGCTTTTGCAGATGCTACAACGAAATCAGCGAAAGGGAGAAAATCCCCAAAGAGGATCCATACTTAA
Predicted protein sequences of Glyma.15g135100
>Glyma.15g135100.1.p sequence-type=predicted peptide transcript=Glyma.15g135100.1 locus=Glyma.15g135100 ID=Glyma.15g135100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPKQKWTAEEEQALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLSVRRVHQVPRQDENSMAITPVVPSDEEIVDVKPLQVSRDIVHIPGPKRSNLSLDKLIMEAITSLKENGGSNKTAIAAFIEDQYWALPGLKSMLSAKLKFLTASGKLIKVNRKYRIAPIAAYSDRRRNSSMLYLKGRQKASMKIDRDETNILTRSQIDLELEKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATTKSAKGRKSPKRIHT*

>Glyma.15g135100.2.p sequence-type=predicted peptide transcript=Glyma.15g135100.2 locus=Glyma.15g135100 ID=Glyma.15g135100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPKQKWTAEEEQALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLSVRRVHQVPRQDENSMAITPVVPSDEEIVDVKPLQVSRDIVHIPGPKRSNLSLDKLIMEAITSLKENGGSNKTAIAAFIEVNRKYRIAPIAAYSDRRRNSSMLYLKGRQKASMKIDRDETNILTRSQIDLELEKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATTKSAKGRKSPKRIHT*

>Glyma.15g135100.3.p sequence-type=predicted peptide transcript=Glyma.15g135100.3 locus=Glyma.15g135100 ID=Glyma.15g135100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPKQKWTAEEEQALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLSVRRVHQVPRQDENSMAITPVVPSDEEIVDVKPLQVSRDIVHIPGPKSLDKLIMEAITSLKENGGSNKTAIAAFIEDQYWALPGLKSMLSAKLKFLTASGKLIKVNRKYRIAPIAAYSDRRRNSSMLYLKGRQKASMKIDRDETNILTRSQIDLELEKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATTKSAKGRKSPKRIHT*

>Glyma.15g135100.4.p sequence-type=predicted peptide transcript=Glyma.15g135100.4 locus=Glyma.15g135100 ID=Glyma.15g135100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPKQKWTAEEEQALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLSVRRVHQVPRQDENSMAITPVVPSDEEIVDVKPLQVSRDIVHIPGPKRSNLSLDKLIMEAITSLKENGGSNKTAIAAFIEDQYWALPGLKSMLSAKLKFLTASGKLIKVNRKYRIAPIAAYSDRRRNSSMLYLKGRQKASMKIDRDETNILTRSQIDLELEKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATTKSAKGRKSPKRIHT*






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