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Report for Sequence Feature Glyma.15g131700

Feature Type:gene_model
Chromosome:Gm15
Start:10581635
stop:10586334
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g131700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63890.2AT histidinol dehydrogenase JGI N/AIEA
GO:0000105GO-bp histidine biosynthetic process EnsemblGenomesN/AIEA
GO:0000105GO-bp histidine biosynthetic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0004399GO-mf histidinol dehydrogenase activity EnsemblGenomesN/AIEA
GO:0004399GO-mf histidinol dehydrogenase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding JGI N/AIEA
KOG2697 KOG Histidinol dehydrogenase JGI N/AIEA
PTHR21256Panther HISTIDINOL DEHYDROGENASE (HDH) JGI N/AIEA
PTHR21256:SF2Panther HISTIDINE BIOSYNTHESIS TRIFUNCTIONAL PROTEIN JGI N/AIEA
PF00815PFAM Histidinol dehydrogenase JGI N/AIEA
HISTSYN-PWYSoyCyc9 L-histidine biosynthesis Plant Metabolic Network ISS
GN7V-42392SoyCyc9-rxn Histidinol dehydrogenase Plant Metabolic Network ISS

Expression Patterns of Glyma.15g131700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g131700
ParalogEvidenceComments
Glyma.09g025600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g131700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g13910 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g131700
>Glyma.15g131700.2 sequence-type=transcript locus=Glyma.15g131700 ID=Glyma.15g131700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTAGTTGTAAAGTATGATGATTCATAACCTTAAACCGGAGCAAAGAGACAAGCGAGAATAGCAGTGTGGTCTCTCTCTCACTCCAACTCTAACCACAGAGACAACAATTCAACAACGTTGCTTCGACGACAATGGAATCTGCGCTTACAGCTTCTAACTGGAACCGTTCTTTGATTCGGATTCGCCACACTAGGCCACGCTTCGTTGCCACTCGCCCCACAGCAATACGGTGCTCCATCAACTCGTATCGCTTGTCCAACCTCACTCCCTCTGAGCTTCAGAGCCTCAAGAGCCGACCTCGTATCGATTTCTCTTCCATTTTCAGTGTTGTTAACCCCATTGTCGATGATGTTCACAAAAGAGGGGATGCTGCAGTTAAAGAATATACTTCAAAGTTTGATAAAGTTGAATTGGATAAAGTAGTTGAGGTTGTCTCGGAGCTCCCTGACCCTGTGCTTGATCCACCTATTAAGGAAGCTTTCGATGTTGCCTACGACAATATTTATGCATTTCATGCTGCTCAGAAGTCACCCGAGAAAAGTGTTGAGAACATGAAAGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGGAGGTACTGTATTGTGCAAAAAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGGCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAGGTTGAAAAGATTTTTGGCCCTGGAAACCAATATGTCACTGCTGCAAAAATGATACTTCAAAACAGTGAAGCCATGATTTCAATTGACATGCCGGCTGGTCCATCTGAAGTTTTGGTCATTGCAGACAAGCATGCAATTCCTTCTCATGTAGCAGCTGATTTGCTTTCCCAGGCTGAGCATGGTCCAGATAGTCAGGTTGTTCTTGTGATTGTTGGAGATGGTGTGGATCTGAATGCAATACAGGAGGAACTCAGCAAGCAGTGCGAGAGTCTTCCAAGAGGCGAGTTTGCCTCCAAAGCTCTGAGCCACAGTTTTTTTGTGTATGCACGTGATATGCTTGAGGCTATCAATTTCTCAAACTTATATGCACCTGAGCATCTAATTATCAATGTGAAAGATGCAGAGAAGTGGGAGAGTTTCATTGAGAATGTTCTGTGTTTTTAGGGCCTTGGACACCTGAGAGTGTTGGTGATTATGCAAGCGGGACAAACCATGTCCTTCCTACTTATGGCTATGCAAGAATGTATGGTGGTGTGTCATTGGACTCCTTCCTGAAGTACATAACTGTGCAGTCTCTTTCGGAGGAAGGTCTAAGAAGGCTTGGGCCATATGTAGCAACCATGGCTGAAGTTGAAGGCCTTGAAGCCCACAAGAGAGCAGTTACCTTGAGACTTCAGGACATAGAAGCCAGGCAGGTTTCAAGATGAGATGATGCCTCAATTCATTGTTCTCTTTATCTCTTGTAAGCTACTATAGCTCTTAGTTTTTGCCAAGTCTAGGGCCATTTTCTTGATGAGATTACCTAGATTTAGGTGGCATTAGTAGCTAGAAGTTGCCATTTCAAGTTCATGTAACAATAGCTGGATAACAAACATATACTAGTGCCTAATATGTTGGTGATCTTTGGTTTTGATCAATCAATAATGCATCCATTTTTTTGGTTGCATAATTCATCCAAATA
Coding sequences of Glyma.15g131700
>Glyma.15g131700.1 sequence-type=CDS polypeptide=Glyma.15g131700.1.p locus=Glyma.15g131700 ID=Glyma.15g131700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATCTGCGCTTACAGCTTCTAACTGGAACCGTTCTTTGATTCGGATTCGCCACACTAGGCCACGCTTCGTTGCCACTCGCCCCACAGCAATACGGTGCTCCATCAACTCGTATCGCTTGTCCAACCTCACTCCCTCTGAGCTTCAGAGCCTCAAGAGCCGACCTCGTATCGATTTCTCTTCCATTTTCAGTGTTGTTAACCCCATTGTCGATGATGTTCACAAAAGAGGGGATGCTGCAGTTAAAGAATATACTTCAAAGTTTGATAAAGTTGAATTGGATAAAGTAGTTGAGGTTGTCTCGGAGCTCCCTGACCCTGTGCTTGATCCACCTATTAAGGAAGCTTTCGATGTTGCCTACGACAATATTTATGCATTTCATGCTGCTCAGAAGTCACCCGAGAAAAGTGTTGAGAACATGAAAGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGGAGGTACTGTATTGTGCAAAAAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGGCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAGGTTGAAAAGATTTTTGGCCCTGGAAACCAATATGTCACTGCTGCAAAAATGATACTTCAAAACAGTGAAGCCATGATTTCAATTGACATGCCGGCTGGTCCATCTGAAGTTTTGGTCATTGCAGACAAGCATGCAATTCCTTCTCATGTAGCAGCTGATTTGCTTTCCCAGGCTGAGCATGGTCCAGATAGTCAGGTTGTTCTTGTGATTGTTGGAGATGGTGTGGATCTGAATGCAATACAGGAGGAACTCAGCAAGCAGTGCGAGAGTCTTCCAAGAGGCGAGTTTGCCTCCAAAGCTCTGAGCCACAGTTTTTTTGTGTATGCACGTGATATGCTTGAGGCTATCAATTTCTCAAACTTATATGCACCTGAGCATCTAATTATCAATGTGAAAGATGCAGAGAAGTGGGAGAGTTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGGCCTTGGACACCTGAGAGTGTTGGTGATTATGCAAGCGGGACAAACCATGTCCTTCCTACTTATGGCTATGCAAGAATGTATGGTGGTGTGTCATTGGACTCCTTCCTGAAGTACATAACTGTGCAGTCTCTTTCGGAGGAAGGTCTAAGAAGGCTTGGGCCATATGTAGCAACCATGGCTGAAGTTGAAGGCCTTGAAGCCCACAAGAGAGCAGTTACCTTGAGACTTCAGGACATAGAAGCCAGGCAGGTTTCAAGATGA

>Glyma.15g131700.2 sequence-type=CDS polypeptide=Glyma.15g131700.2.p locus=Glyma.15g131700 ID=Glyma.15g131700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATCTGCGCTTACAGCTTCTAACTGGAACCGTTCTTTGATTCGGATTCGCCACACTAGGCCACGCTTCGTTGCCACTCGCCCCACAGCAATACGGTGCTCCATCAACTCGTATCGCTTGTCCAACCTCACTCCCTCTGAGCTTCAGAGCCTCAAGAGCCGACCTCGTATCGATTTCTCTTCCATTTTCAGTGTTGTTAACCCCATTGTCGATGATGTTCACAAAAGAGGGGATGCTGCAGTTAAAGAATATACTTCAAAGTTTGATAAAGTTGAATTGGATAAAGTAGTTGAGGTTGTCTCGGAGCTCCCTGACCCTGTGCTTGATCCACCTATTAAGGAAGCTTTCGATGTTGCCTACGACAATATTTATGCATTTCATGCTGCTCAGAAGTCACCCGAGAAAAGTGTTGAGAACATGAAAGGAGTCCAATGCAAGAGAGTTGCAAGAAGTATTAACTCCGTGGGTCTTTATGTTCCAGGGGGAACTGCTGTATTACCTTCAACAGCTTTGATGCTTGCAGTTCCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGGAGGTACTGTATTGTGCAAAAAAGGCTGGGGTGACTCACATTCTCAAAGCTGGAGGAGCACAGGCCATATCTGCTATGGCTTGGGGAACAGAAACTTGTCCAAAGGTTGAAAAGATTTTTGGCCCTGGAAACCAATATGTCACTGCTGCAAAAATGATACTTCAAAACAGTGAAGCCATGATTTCAATTGACATGCCGGCTGGTCCATCTGAAGTTTTGGTCATTGCAGACAAGCATGCAATTCCTTCTCATGTAGCAGCTGATTTGCTTTCCCAGGCTGAGCATGGTCCAGATAGTCAGGTTGTTCTTGTGATTGTTGGAGATGGTGTGGATCTGAATGCAATACAGGAGGAACTCAGCAAGCAGTGCGAGAGTCTTCCAAGAGGCGAGTTTGCCTCCAAAGCTCTGAGCCACAGTTTTTTTGTGTATGCACGTGATATGCTTGAGGCTATCAATTTCTCAAACTTATATGCACCTGAGCATCTAATTATCAATGTGAAAGATGCAGAGAAGTGGGAGAGTTTCATTGAGAATGTTCTGTGTTTTTAG
Predicted protein sequences of Glyma.15g131700
>Glyma.15g131700.1.p sequence-type=predicted peptide transcript=Glyma.15g131700.1 locus=Glyma.15g131700 ID=Glyma.15g131700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESALTASNWNRSLIRIRHTRPRFVATRPTAIRCSINSYRLSNLTPSELQSLKSRPRIDFSSIFSVVNPIVDDVHKRGDAAVKEYTSKFDKVELDKVVEVVSELPDPVLDPPIKEAFDVAYDNIYAFHAAQKSPEKSVENMKGVQCKRVARSINSVGLYVPGGTAVLPSTALMLAVPAQIAGCKTIVLANPPTRDGTTCKEVLYCAKKAGVTHILKAGGAQAISAMAWGTETCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADKHAIPSHVAADLLSQAEHGPDSQVVLVIVGDGVDLNAIQEELSKQCESLPRGEFASKALSHSFFVYARDMLEAINFSNLYAPEHLIINVKDAEKWESFIENAGSVFLGPWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYITVQSLSEEGLRRLGPYVATMAEVEGLEAHKRAVTLRLQDIEARQVSR*

>Glyma.15g131700.2.p sequence-type=predicted peptide transcript=Glyma.15g131700.2 locus=Glyma.15g131700 ID=Glyma.15g131700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESALTASNWNRSLIRIRHTRPRFVATRPTAIRCSINSYRLSNLTPSELQSLKSRPRIDFSSIFSVVNPIVDDVHKRGDAAVKEYTSKFDKVELDKVVEVVSELPDPVLDPPIKEAFDVAYDNIYAFHAAQKSPEKSVENMKGVQCKRVARSINSVGLYVPGGTAVLPSTALMLAVPAQIAGCKTIVLANPPTRDGTTCKEVLYCAKKAGVTHILKAGGAQAISAMAWGTETCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADKHAIPSHVAADLLSQAEHGPDSQVVLVIVGDGVDLNAIQEELSKQCESLPRGEFASKALSHSFFVYARDMLEAINFSNLYAPEHLIINVKDAEKWESFIENVLCF*






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