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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G05390.1 | AT | root FNR 1 | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0004324 | GO-mf | ferredoxin-NADP+ reductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| KOG0534 | KOG | NADH-cytochrome b-5 reductase | JGI | N/A | IEA |
| PTHR19384 | Panther | FLAVODOXIN-RELATED | JGI | N/A | IEA |
| PTHR19384:SF1 | Panther | JGI | N/A | IEA | |
| PF00175 | PFAM | Oxidoreductase NAD-binding domain | JGI | N/A | IEA |
| PF00970 | PFAM | Oxidoreductase FAD-binding domain | JGI | N/A | IEA |
| PHOTOALL-PWY | SoyCyc9 | oxygenic photosynthesis | Plant Metabolic Network | ISS | |
| PWY-101 | SoyCyc9 | photosynthesis light reactions | Plant Metabolic Network | ISS | |
| GN7V-58700 | SoyCyc9-rxn | ferredoxin-NADP+ reductase | Plant Metabolic Network | ISS |
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Glyma.15g130100 not represented in the dataset |
Glyma.15g130100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g024100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g13680 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g130100.1 sequence-type=CDS polypeptide=Glyma.15g130100.1.p locus=Glyma.15g130100 ID=Glyma.15g130100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTCATTTGGCCCTGTCTCAGATGGCTGTAACTGTTCCTGTTGGCAACGATTTGTCTCTCAGAAGATCTGCAGTTAAGGCCCCTAACTTGAACTTTTGGGATAAATCATGGGCACCAGTATTTACTTTGGACTTGAAGCCAAACAACCCAAGTTTAAGAAGTCGTCATGTGGTATGCATGTCCGTGCAACAAGCAAGTGTATCCAAAGTTAATGTCTCACCTTTAGAATTGGAAGATGCTAAAGAACCTCCATTGAACTTATACAAGCCTAAAGAACCCTATACAGCAACAATTGTTTCTGTTGATAGGCTAGTGGGGCCAAAGGCTCCTGGGGAAACTTGTCATATTGTGATTGATCACGGTGGAAATGTTCCCTACTGGGAAGGACAGAGTTATGGTGTTATTCCACCAGGTGAAAATCCTAAGAAACCTGGGGCTCCTCATAATGTTCGACTATATTCAATTGCTTCCACAAGGTATGGGGACTTTTTTGATGGAAAAACTGCCAGCTTGTGTGTGCGTCGTGCTGTTTATTATGATCCTGAGACAGGAAAGGAAGATCCTTCCAAGAATGGCATTTGTAGCAATTTTTTGTGTAACTCAAAGCCAGGAGACAAAATTCAGATCACAGGCCCGTCGGGGAAGATAATGCTTTTGCCCGAGGATGACCCAAATGCTACCCATATAATGATTGCCACAGGCACTGGTGTTGCTCCATTCAGAGGCTATCTACGCCGAATGTTCATGGAATCAGTCCCTGCATACAAGTTTGGTGGATTAGCATGGCTTTTCCTTGGAGTTGCCAACACTGACAGTCTTCTCTATGATGATGAATTCAGCAAATACCTCAAGGATTATCCGGACAATTTCCGCTACAATCGAGCCCTCAGCAGAGAACAAAAGAACAAGAGTGGGGGCAAAATGTATGTTCAGGATAAGATTGAGGAGTACAGTGATGAAATCTTCAAACTCCTGGATAATGGGGCCCACATATATTTCTGTGGTCTGAAAGGGATGATGCCAGGGATCCAAGATACGCTGAAGAAGGTTGCTGAGCAAAGAGGAGAAAGTTGGGAAGAGAAGCTTTCTCAACTTAAGAAGAACAAACAATGGCATGTTGAAGTCTATTGA
>Glyma.15g130100.1.p sequence-type=predicted peptide transcript=Glyma.15g130100.1 locus=Glyma.15g130100 ID=Glyma.15g130100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAHLALSQMAVTVPVGNDLSLRRSAVKAPNLNFWDKSWAPVFTLDLKPNNPSLRSRHVVCMSVQQASVSKVNVSPLELEDAKEPPLNLYKPKEPYTATIVSVDRLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPHNVRLYSIASTRYGDFFDGKTASLCVRRAVYYDPETGKEDPSKNGICSNFLCNSKPGDKIQITGPSGKIMLLPEDDPNATHIMIATGTGVAPFRGYLRRMFMESVPAYKFGGLAWLFLGVANTDSLLYDDEFSKYLKDYPDNFRYNRALSREQKNKSGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMPGIQDTLKKVAEQRGESWEEKLSQLKKNKQWHVEVY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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