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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02870.1 | AT | Inositol monophosphatase family protein | JGI | N/A | IEA |
| GO:0006020 | GO-bp | inositol metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006021 | GO-bp | inositol biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0007165 | GO-bp | signal transduction | EnsemblGenomes | N/A | IEA |
| GO:0046854 | GO-bp | phosphatidylinositol phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0046854 | GO-bp | phosphatidylinositol phosphorylation | JGI | N/A | IEA |
| GO:0046855 | GO-bp | inositol phosphate dephosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0008934 | GO-mf | inositol monophosphate 1-phosphatase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0052832 | GO-mf | inositol monophosphate 3-phosphatase activity | EnsemblGenomes | N/A | IEA |
| GO:0052833 | GO-mf | inositol monophosphate 4-phosphatase activity | EnsemblGenomes | N/A | IEA |
| GO:0052834 | GO-mf | inositol monophosphate phosphatase activity | EnsemblGenomes | N/A | IEA |
| KOG2951 | KOG | Inositol monophosphatase | JGI | N/A | IEA |
| PTHR20854 | Panther | INOSITOL MONOPHOSPHATASE | JGI | N/A | IEA |
| PTHR20854:SF4 | Panther | INOSITOL MONOPHOSPHATASE TTX-7 | JGI | N/A | IEA |
| PF00459 | PFAM | Inositol monophosphatase family | JGI | N/A | IEA |
| PWY-2301 | SoyCyc9 | myo-inositol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-4702 | SoyCyc9 | phytate degradation I | Plant Metabolic Network | ISS | |
| PWY-6363 | SoyCyc9 | D-myo-inositol (1,4,5)-trisphosphate degradation | Plant Metabolic Network | ISS | |
| PWY-882 | SoyCyc9 | L-ascorbate biosynthesis I (L-galactose pathway) | Plant Metabolic Network | ISS | |
| GN7V-47104 | SoyCyc9-rxn | inositol-phosphate phosphatase | Plant Metabolic Network | ISS |
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Glyma.15g115500 not represented in the dataset |
Glyma.15g115500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g011100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g12230 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g115500.1 sequence-type=CDS polypeptide=Glyma.15g115500.1.p locus=Glyma.15g115500 ID=Glyma.15g115500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTTGACAATGATTCGCTCTCGGAATTCCTCGCATCTGCGGTCGACGCGGCTCAGAAAGCTGGCGAGATTATTCGAAAAGGCTTCTACCAGACCAAAAATGTGGAACACAAAGGACAGGTTGATTTGGTCACAGAAACTGATAAAGCATGTGAAGAACTCATATTTAATCATCTGAAACAGCTTTATCCCACTCACAAGTTCATTGGGGAAGAGACCACAGCTGCCTATGGCACTACAGAACTTACAGATGAACCCACATGGATAGTTGATCCCCTGGATGGAACTACTAACTTTGTGCATGGGTTCCCCTTTGTTTGTGTCTCCATTGGTCTCACAATTGGAAAAACTCCTACAATTGGTGTTGTATACAATCCAATAATTAATGAGCTTTTTACTGGAATCCATGGAAAAGGTGCCTTTTTGAATGGGAATCCCATAAAAGTATCGTCACAAACTGAACTAATCAGCTCTCTTCTTGCAACTGAGGCTGGAACAAAACGTGACAAAGAAACAGTAGATGCCTCTACCGATAGGATTAAAAGCTTACTTTTCAAGGTGAGATCTCTTCGAATGAGTGGCTCCTGTGCTCTGAATCTGTGTGGAATTGCATGTGGAAGGCTGGATGTATTCTTTGAACTTGGCTTTGGTGGTCCTTGGGATGTAGCAGGTGGTGCTGTCATTGTTAGAGAAGCTGGAGGTGTTGTATTTGATCCGTCCGGTGCAGATTTTGACATAACATCTCAGCGAGTAGCAGCTTCAAACCCTTTCTTAAAGGATGCACTTGTTGATACTCTGCGCCAAATGGTGTGA
>Glyma.15g115500.1.p sequence-type=predicted peptide transcript=Glyma.15g115500.1 locus=Glyma.15g115500 ID=Glyma.15g115500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVDNDSLSEFLASAVDAAQKAGEIIRKGFYQTKNVEHKGQVDLVTETDKACEELIFNHLKQLYPTHKFIGEETTAAYGTTELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIGKTPTIGVVYNPIINELFTGIHGKGAFLNGNPIKVSSQTELISSLLATEAGTKRDKETVDASTDRIKSLLFKVRSLRMSGSCALNLCGIACGRLDVFFELGFGGPWDVAGGAVIVREAGGVVFDPSGADFDITSQRVAASNPFLKDALVDTLRQMV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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