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Report for Sequence Feature Glyma.15g112000

Feature Type:gene_model
Chromosome:Gm15
Start:8788728
stop:8792704
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g112000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04210.1AT plant UBX domain containing protein 4 JGI N/AIEA
GO:0000045GO-bp autophagosome assembly EnsemblGenomesN/AIEA
GO:0007030GO-bp Golgi organization EnsemblGenomesN/AIEA
GO:0031468GO-bp nuclear envelope reassembly EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0043666GO-bp regulation of phosphoprotein phosphatase activity EnsemblGenomesN/AIEA
GO:0050790GO-bp regulation of catalytic activity EnsemblGenomesN/AIEA
GO:0061025GO-bp membrane fusion EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0019888GO-mf protein phosphatase regulator activity EnsemblGenomesN/AIEA
GO:0043130GO-mf ubiquitin binding EnsemblGenomesN/AIEA
KOG2086 KOG Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion JGI N/AIEA
PTHR23333Panther UBX DOMAIN CONTAINING PROTEIN JGI N/AIEA
PTHR23333:SF6Panther JGI N/AIEA
PF00789PFAM UBX domain JGI N/AIEA
PF08059PFAM SEP domain JGI N/AIEA

Expression Patterns of Glyma.15g112000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g112000 not represented in the dataset
Glyma.15g112000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g112000
ParalogEvidenceComments
Glyma.09g007600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g112000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g11860 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g112000
>Glyma.15g112000.1 sequence-type=CDS polypeptide=Glyma.15g112000.1.p locus=Glyma.15g112000 ID=Glyma.15g112000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCACGGGACAACAAGAAGGCGTCGAGCAGCCGAGCCGGCAGAATTCGCACCCTCTCCGATCTGAACCGTCCCTCCGCCGATTCCGACAGCGACTCCGATGGCCCTCAGGAGTACTACACCGGCGGCGAAAAGAGTGGAATGCTTGTCCAGGATCCTTCAAAGGGAAATGATGTGGATGAAATTTTCAATCAAGCTAGGCAACTTGGGGCTGTTGAAAGGCCTCTTGATCAGCTTCAGGAGCCTCCAAGGTCAACTAGCTTTACTGGAACTGGCAGGTTACTCTCGGGGGAAACTACACGATCTACTAATAATCAGCAACCTGAGGCTGTTGTTCATAACATTGTTTTCTGGAGTAATGGTTTCACTGTAAATGATGGACCATTGAGGAGTTTGGACGATCCTGAAAATGCCTCATTTTTAGAGAGCATAAAAAAATCTGAGTGTCCCAAAGAGCTTGAGCCTGAAGATAGGAGGTCATCTGTTAATGTTAATCTCATACGGAGGAATGAGAACTATCGTGAACCCGAAAAGCAGCATGTTGCATTTCAGGGAGTGGGAAGAACTCTTGGAAGCAGCTCTACATCAATGGCTCCTGACCCTCCTGCTGCCTCAACACCTCCCAACACAGCACCAACTCCTTCTGCTGGCCTGGTAGTTGATCAATCATTGCCATCAACCTCAATACAACTCAGGTTGGCTGACGGAACCCGCTTGATATCACATTTTAATTACCACCACACAATCAGCGACATTCGTGCCTTCATTGATGCATCTAGACCTGGGGGTCGGCAGAATTATCAACTTCAGTTGATGGGTTTCCCCCCAAAGATTCTAGCTGATGAAACTCAGACTATAGAGCAGGCAGGACTGGCAAATTCAGTTGTCATACAGAAATTTTAG
Predicted protein sequences of Glyma.15g112000
>Glyma.15g112000.1.p sequence-type=predicted peptide transcript=Glyma.15g112000.1 locus=Glyma.15g112000 ID=Glyma.15g112000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASRDNKKASSSRAGRIRTLSDLNRPSADSDSDSDGPQEYYTGGEKSGMLVQDPSKGNDVDEIFNQARQLGAVERPLDQLQEPPRSTSFTGTGRLLSGETTRSTNNQQPEAVVHNIVFWSNGFTVNDGPLRSLDDPENASFLESIKKSECPKELEPEDRRSSVNVNLIRRNENYREPEKQHVAFQGVGRTLGSSSTSMAPDPPAASTPPNTAPTPSAGLVVDQSLPSTSIQLRLADGTRLISHFNYHHTISDIRAFIDASRPGGRQNYQLQLMGFPPKILADETQTIEQAGLANSVVIQKF*






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