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Report for Sequence Feature Glyma.15g108200

Feature Type:gene_model
Chromosome:Gm15
Start:8512403
stop:8514657
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g108200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62040.2AT Ubiquitin-like superfamily protein JGI N/AIEA
GO:0000045GO-bp autophagic vacuole assembly JGI N/AIEA
GO:0006914GO-bp autophagy EnsemblGenomesN/AIEA
GO:0006995GO-bp cellular response to nitrogen starvation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
KOG1654 KOG Microtubule-associated anchor protein involved in autophagy and membrane trafficking JGI N/AIEA
PTHR10969Panther MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED JGI N/AIEA
PTHR10969:SF4Panther GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 2 JGI N/AIEA
PF02991PFAM Autophagy protein Atg8 ubiquitin like JGI N/AIEA

Proteins Associated with Glyma.15g108200
LocusGene SymbolProtein Name
ATG8C autophagy-related protein 8c

Expression Patterns of Glyma.15g108200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.15g108200 not represented in the dataset
Glyma.15g108200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g108200
ParalogEvidenceComments
Glyma.09g003900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g108200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g11510 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.15g108200
>Glyma.15g108200.1 sequence-type=CDS polypeptide=Glyma.15g108200.1.p locus=Glyma.15g108200 ID=Glyma.15g108200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCAAAACCTCCTTCAAGCTTCAGCATCCTTTGGAGAGAAGGCAGGCTGAAGCTTCTCGCATTAGAGAGAAATATCCTGATAGAATACCTGTGATTGTGGAGAAAGCTGAAAGAAGTGACATTCCAGACATTGATAAGAAAAAATACCTTGTCCCTGCTGATTTGACTGTTGGCCAGTTTGTTTATGTTGTTCGCAAAAGGATTAAGCTCAGTGCAGAGAAGGCTATTTTTGTTTTCATCAACAACACTCTACCTCCAACTGCTGCATTGATGTCTGCTATTTATGAGGAAAATAAGGATCAAGATGGCTTTCTTTACATGACTTACAGTGGAGAGAACACCTTCGGATCCCATTAG
Predicted protein sequences of Glyma.15g108200
>Glyma.15g108200.1.p sequence-type=predicted peptide transcript=Glyma.15g108200.1 locus=Glyma.15g108200 ID=Glyma.15g108200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKTSFKLQHPLERRQAEASRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFINNTLPPTAALMSAIYEENKDQDGFLYMTYSGENTFGSH*






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