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Report for Sequence Feature Glyma.15g107900

Feature Type:gene_model
Chromosome:Gm15
Start:8484079
stop:8485970
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.15g107900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04640.1AT ATPase, F1 complex, gamma subunit protein JGI N/AIEA
GO:0015986GO-bp ATP synthesis coupled proton transport EnsemblGenomesN/AIEA
GO:0015986GO-bp ATP synthesis coupled proton transport JGI N/AIEA
GO:0099132GO-bp ATP hydrolysis coupled cation transmembrane transport EnsemblGenomesN/AIEA
GO:0045261GO-cc proton-transporting ATP synthase complex, catalytic core F(1) EnsemblGenomesN/AIEA
GO:0045261GO-cc proton-transporting ATP synthase complex, catalytic core F(1) JGI N/AIEA
GO:0046933GO-mf proton-transporting ATP synthase activity, rotational mechanism EnsemblGenomesN/AIEA
GO:0046933GO-mf proton-transporting ATP synthase activity, rotational mechanism JGI N/AIEA
GO:0046961GO-mf proton-transporting ATPase activity, rotational mechanism JGI N/AIEA
KOG1531 KOG F0F1-type ATP synthase, gamma subunit JGI N/AIEA
PTHR11693Panther ATP SYNTHASE GAMMA CHAIN JGI N/AIEA
PTHR11693:SF9Panther JGI N/AIEA
PF00231PFAM ATP synthase JGI N/AIEA
PWY-7219SoyCyc9 adenosine ribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY-7229SoyCyc9 superpathway of adenosine nucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-841SoyCyc9 superpathway of purine nucleotides de novo biosynthesis I Plant Metabolic Network ISS

Proteins Associated with Glyma.15g107900
LocusGene SymbolProtein Name
ATPC ATP synthase gamma chain, chloroplastic

Expression Patterns of Glyma.15g107900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.15g107900
ParalogEvidenceComments
Glyma.13g204800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.15g107900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma15g11490 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.15g107900
>Glyma.15g107900.2 sequence-type=transcript locus=Glyma.15g107900 ID=Glyma.15g107900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACCTCCACTCATTTCCCACTTGTTACTTCCACGGCAATAGAGAATCCTaacccaacacaacacacacattaacacaaGGAGAGGATAAGACCCCCCCTCTCTCTCTCTCACAAACAAAAGAAAGAAGAAAAAAAATCTCAAAATAAAACAACCAAACCACACACTTCACACCCTCTTCAACATCCTCAGCAAGTACAAGAACAAGAAGAAACAATGTCTTGCTCCAATCTCACAATGTTGGTGTCCTCAAAACCTTCCCTTTCCGATCCCTCCAATCTCTCCTTCCGCTCTGTCCTCAACCCTTTTCAGCTCCCTTCACAAAACCCAACTTCATGCACTCCTTCACGCTCCTCAACCACCCAAATTCAGTGTGGTCTGAGAGAACTCAGAACCCGCATTGATTCCGTGAAGAACACTCAGAAAATCACCGAGGCTATGAAGCTTGTGGCTGCAGCCAAAGTGAGAAGAGCTCAAGAAGCTGTTGTCAACGGAAGACCCTTCTCAGAGACCCTCGTTGAAGTCCTCTACAACATCAACGAGCAGCTCCTAACTGAGGACGTAGACATCCCTCTCACAAAGGTTAGGCCTGTCAAGAAAGTTGCACTTGTTGTGGTCACCGGCGACCGTGGTCTCTGCGGCGGTTTCAACAACGCAATCATAAAGAAAGCTGAGGCTAGAATCAGGGAATTGAAGGAGCTTGGCTTGGAATTCACTGTCATAAGTGTTGGCAAGAAGGGTAACTCTTATTTCATCAGAAGGCCTTATATTCCGGTTGACAGGTTTCTAGAAGGTGGCACACTTCCAACTGCTAAGGAAGCTCAGGCCATTGCTGATGATGTTTTCTCACTCTTTGTGAGTGAAGAGGTTGACAAGGTGGAGCTTCTATACACCAAGTTCGTGTCGTTGGTGAAATCGGATCCCGTGATTCATACCTTGCTTCCTCTTTCGCCAAAGGGAGAGATTTGTGATGTGAATGGTGTGTGTGTTGATGCTGCTGAGGATGAGTTCTTCAGGTTGACTACCAAGGAAGGAAAGTTGACTGTGGAGAGAGATGTTGTGAGGACTAAAACCGCGGATTTTTCGCCAATTTTGCAGTTTGAACAAGACCCCGTTCAGATCCTTGATGCACTGCTGCCACTGTATTTGAACAGCCAGGTTCTGAGGGCATTGCAGGAGTCCTTGGCGAGTGAACTCGCCGCCAGAATGAGTGCCATGAGCAATGCCACAGATAATGCTATTGAGTTGAAGAAGAACTTGTCCATTGTGTACAATAGGGAGCGCCAGGCTAAGATCACTGGTGAAATTCTGGAAATTGTGGCTGGTGCCAATGCCTTGCAATAGTGCAATTTGTAGGCTTTGTGCAATAGGAAAAATGCGATCAAATCTGAAGCGGACACttttttttttgttatgtttttttttttCCTTCTGAATTATGTATGTAATGAATCAATAATAGATCTATAATATAAAGATTCAGAGAGTTATCTCTGTTGATTTGATGCACC
Coding sequences of Glyma.15g107900
>Glyma.15g107900.1 sequence-type=CDS polypeptide=Glyma.15g107900.1.p locus=Glyma.15g107900 ID=Glyma.15g107900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTGCTCCAATCTCACAATGTTGGTGTCCTCAAAACCTTCCCTTTCCGATCCCTCCAATCTCTCCTTCCGCTCTGTCCTCAACCCTTTTCAGCTCCCTTCACAAAACCCAACTTCATGCACTCCTTCACGCTCCTCAACCACCCAAATTCAGTGTGGTCTGAGAGAACTCAGAACCCGCATTGATTCCGTGAAGAACACTCAGAAAATCACCGAGGCTATGAAGCTTGTGGCTGCAGCCAAAGTGAGAAGAGCTCAAGAAGCTGTTGTCAACGGAAGACCCTTCTCAGAGACCCTCGTTGAAGTCCTCTACAACATCAACGAGCAGCTCCTAACTGAGGACGTAGACATCCCTCTCACAAAGGTTAGGCCTGTCAAGAAAGTTGCACTTGTTGTGGTCACCGGCGACCGTGGTCTCTGCGGCGGTTTCAACAACGCAATCATAAAGAAAGCTGAGGCTAGAATCAGGGAATTGAAGGAGCTTGGCTTGGAATTCACTGTCATAAGTGTTGGCAAGAAGGGTAACTCTTATTTCATCAGAAGGCCTTATATTCCGGTTGACAGGTTTCTAGAAGGTGGCACACTTCCAACTGCTAAGGAAGCTCAGGCCATTGCTGATGATGTTTTCTCACTCTTTGTGAGTGAAGAGGTTGACAAGGTGGAGCTTCTATACACCAAGTTCGTGTCGTTGGTGAAATCGGATCCCGTGATTCATACCTTGCTTCCTCTTTCGCCAAAGGGAGAGATTTGTGATGTGAATGGTGTGTGTGTTGATGCTGCTGAGGATGAGTTCTTCAGGTTGACTACCAAGGAAGGAAAGTTGACTGTGGAGAGAGATGTTGTGAGGACTAAAACCGCGGATTTTTCGCCAATTTTGCAGTTTGAACAAGACCCCGTTCAGATCCTTGATGCACTGCTGCCACTGTATTTGAACAGCCAGGTTCTGAGGGCATTGCAGGAGTCCTTGGCGAGTGAACTCGCCGCCAGAATGAGTGCCATGAGCAATGCCACAGATAATGCTATTGAGTTGAAGAAGAACTTGTCCATTGTGTACAATAGGGAGCGCCAGGCTAAGATCACTGGTGAAATTCTGGAAATTGTGGCTGGTGCCAATGCCTTGCAATAG

>Glyma.15g107900.2 sequence-type=CDS polypeptide=Glyma.15g107900.2.p locus=Glyma.15g107900 ID=Glyma.15g107900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTGCTCCAATCTCACAATGTTGGTGTCCTCAAAACCTTCCCTTTCCGATCCCTCCAATCTCTCCTTCCGCTCTGTCCTCAACCCTTTTCAGCTCCCTTCACAAAACCCAACTTCATGCACTCCTTCACGCTCCTCAACCACCCAAATTCAGTGTGGTCTGAGAGAACTCAGAACCCGCATTGATTCCGTGAAGAACACTCAGAAAATCACCGAGGCTATGAAGCTTGTGGCTGCAGCCAAAGTGAGAAGAGCTCAAGAAGCTGTTGTCAACGGAAGACCCTTCTCAGAGACCCTCGTTGAAGTCCTCTACAACATCAACGAGCAGCTCCTAACTGAGGACGTAGACATCCCTCTCACAAAGGTTAGGCCTGTCAAGAAAGTTGCACTTGTTGTGGTCACCGGCGACCGTGGTCTCTGCGGCGGTTTCAACAACGCAATCATAAAGAAAGCTGAGGCTAGAATCAGGGAATTGAAGGAGCTTGGCTTGGAATTCACTGTCATAAGTGTTGGCAAGAAGGGTAACTCTTATTTCATCAGAAGGCCTTATATTCCGGTTGACAGGTTTCTAGAAGGTGGCACACTTCCAACTGCTAAGGAAGCTCAGGCCATTGCTGATGATGTTTTCTCACTCTTTGTGAGTGAAGAGGTTGACAAGGTGGAGCTTCTATACACCAAGTTCGTGTCGTTGGTGAAATCGGATCCCGTGATTCATACCTTGCTTCCTCTTTCGCCAAAGGGAGAGATTTGTGATGTGAATGGTGTGTGTGTTGATGCTGCTGAGGATGAGTTCTTCAGGTTGACTACCAAGGAAGGAAAGTTGACTGTGGAGAGAGATGTTGTGAGGACTAAAACCGCGGATTTTTCGCCAATTTTGCAGTTTGAACAAGACCCCGTTCAGATCCTTGATGCACTGCTGCCACTGTATTTGAACAGCCAGGTTCTGAGGGCATTGCAGGAGTCCTTGGCGAGTGAACTCGCCGCCAGAATGAGTGCCATGAGCAATGCCACAGATAATGCTATTGAGTTGAAGAAGAACTTGTCCATTGTGTACAATAGGGAGCGCCAGGCTAAGATCACTGGTGAAATTCTGGAAATTGTGGCTGGTGCCAATGCCTTGCAATAG
Predicted protein sequences of Glyma.15g107900
>Glyma.15g107900.1.p sequence-type=predicted peptide transcript=Glyma.15g107900.1 locus=Glyma.15g107900 ID=Glyma.15g107900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSCSNLTMLVSSKPSLSDPSNLSFRSVLNPFQLPSQNPTSCTPSRSSTTQIQCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLLTEDVDIPLTKVRPVKKVALVVVTGDRGLCGGFNNAIIKKAEARIRELKELGLEFTVISVGKKGNSYFIRRPYIPVDRFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTKTADFSPILQFEQDPVQILDALLPLYLNSQVLRALQESLASELAARMSAMSNATDNAIELKKNLSIVYNRERQAKITGEILEIVAGANALQ*

>Glyma.15g107900.2.p sequence-type=predicted peptide transcript=Glyma.15g107900.2 locus=Glyma.15g107900 ID=Glyma.15g107900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSCSNLTMLVSSKPSLSDPSNLSFRSVLNPFQLPSQNPTSCTPSRSSTTQIQCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLLTEDVDIPLTKVRPVKKVALVVVTGDRGLCGGFNNAIIKKAEARIRELKELGLEFTVISVGKKGNSYFIRRPYIPVDRFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTKTADFSPILQFEQDPVQILDALLPLYLNSQVLRALQESLASELAARMSAMSNATDNAIELKKNLSIVYNRERQAKITGEILEIVAGANALQ*






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