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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19040.1 | AT | isopentenyltransferase 5 | JGI | N/A | IEA |
| GO:0006400 | GO-bp | tRNA modification | EnsemblGenomes | N/A | IEA |
| GO:0008033 | GO-bp | tRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0008033 | GO-bp | tRNA processing | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0004161 | GO-mf | dimethylallyltranstransferase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0052381 | GO-mf | tRNA dimethylallyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG1384 | KOG | tRNA delta(2)-isopentenylpyrophosphate transferase | JGI | N/A | IEA |
| PTHR11088 | Panther | TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED | JGI | N/A | IEA |
| PTHR11088:SF20 | Panther | JGI | N/A | IEA | |
| PF01715 | PFAM | IPP transferase | JGI | N/A | IEA |
| PWY-2681 | SoyCyc9 | trans-zeatin biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-44655 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| IPT | isopentenyl transferase |
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Glyma.15g103800 not represented in the dataset |
Glyma.15g103800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g209100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma15g11040 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.15g103800.1 sequence-type=CDS polypeptide=Glyma.15g103800.1.p locus=Glyma.15g103800 ID=Glyma.15g103800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACATCTCAACATCAGCCTGCGCCTGCGCCTGCGCCTGCAAACAGGAGCTGCCCCTAGTAAGCTTCCAAAAGGGATCACTTATGATGGAGTCGTTGTTTCATCATCGGAATAACAGCAACAAGGATAAGGTAGTGGTGATAATGGGGGCCACTGGTGCCGGCAAGACGAAGTTGGCTATAGACGTGGCCAAACACTTCCAACCAGCGGAGATAGTGAACTCAGACAAAATGCAAGTGTACAAGGGCCTAGACATCACCACCAATAAGGTCACTGAAGAAGAGTGTGGCGGGGTCCCACATCATCTGCTTGGCACTGTTGACCCATATATAAATTTCAGCGCCAACGACTTCTGTCGCTACGCCACTTTGGCCATCGACTCCATTGTAGAAAAAAATGGCTTACCCATCATCGCTGGAGGCTCTAATTCTTATTTAGACGCGTTGGTCAATCATTATCCTGAGTTTAGGTTAAGGTACCAGTGCTGTTTCCTCTGGGTCGACGTGGCACTCCCCGTTCTCCATTCCTCCCTCCAGGCACGTGTGGACCGCATGATCGAAGCCGGTCAAGTCAACGAGGTTCGTGACTTCTTCGACCCGAGCGTAACCGATTACACCAAAGGGATACGAAGGGCTATTGGGGTGCCCGAATTCGACGATTTTCTTCGCGCAGAGGCGAATGGGCGGCTAGATGAGAGAACAAAACAGAGGCTTCTTCAGGCTGCCATTGCAAGGTTGAAGATCAACAACTGCACGCTCGCCAACCGCCAGATTCAGAAGATCCACCGCCTGCACGCCTTCTGGAAACGGAACATGCACCGCCTCGACGCCACCGAGGTTTTCCGCGGCTCACGTGACGCCTGGCGCGATCACGTGCTCGCCAAGACCTTGATCATCCTCCACAAGTTTCTCTACGGAGAGAAGAAAACGCCGCACGTTGTCCCCGCCGGAATCGTCTCCGCCAAAGACGTAATTGCGGCGGCGGCGGTGCTTTCTTCGCCGCCGGTAGCAATGGCAGCAACGCGGTAG
>Glyma.15g103800.1.p sequence-type=predicted peptide transcript=Glyma.15g103800.1 locus=Glyma.15g103800 ID=Glyma.15g103800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNISTSACACACACKQELPLVSFQKGSLMMESLFHHRNNSNKDKVVVIMGATGAGKTKLAIDVAKHFQPAEIVNSDKMQVYKGLDITTNKVTEEECGGVPHHLLGTVDPYINFSANDFCRYATLAIDSIVEKNGLPIIAGGSNSYLDALVNHYPEFRLRYQCCFLWVDVALPVLHSSLQARVDRMIEAGQVNEVRDFFDPSVTDYTKGIRRAIGVPEFDDFLRAEANGRLDERTKQRLLQAAIARLKINNCTLANRQIQKIHRLHAFWKRNMHRLDATEVFRGSRDAWRDHVLAKTLIILHKFLYGEKKTPHVVPAGIVSAKDVIAAAAVLSSPPVAMAATR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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